External Email - Use Caution Dear Eric, Thanks for the interest in our tool! Can you please send us the exact command line that you used, and the full output of mri_easyreg? Cheers, /Eugenio
-- Juan Eugenio Iglesias http://secure-web.cisco.com/1U33kJUEZ__sfspXazQKQX0hyZheFOuaPY4ZYQX7M1oqicMzMIhcwB7IXyPqhLqRQSzRrVfcmO5sRw0JCKEmGnCWGmXfSPa1_mmxNgT_JkO-bBaMQp7fRvDZlsEuuU-oEf0Ca4pBrQQ7XDE0oMkn09jboq6mrKi1y1ohW2Na3ERNUJvbV_x4kHPgIl2Ez_MQX5B7hk47NG4V9rHOKxytJ8Q41um8ARqtElBIGdjj2sIHdF7JHTyv7FRRIVZ1rJIfI/http%3A%2F%2Fwww.jeiglesias.com From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Eric BARDINET <eric.bardi...@upmc.fr> Date: Tuesday, August 22, 2023 at 04:57 To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Easyreg > cortical parcels missing after SynthSeg with --parc option ? External Email - Use Caution Hello Freesurfer Developpers, I attempted to run mri_easyreg (Freesurfer 7.4) between two MP2RAGE UNI images (acquired on a SIEMENS PRISMA 3T). First, I did not include segmentations, as I understood that EasyReg would run it for me. But it didn't. I don't know why. Then I first ran mri_synthseg with the --parc option on the two images. I checked the results, and saw cortical labels on both hemispheres. But when I ran again mri-easyreg adding these images (--ref_seg --flo_reg), I get again the > no cortical parcels. What did I do wong? Any hints? Thanks in advance for your help. Best, Eric _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1epcGO8lmlLVq-0yQxajRcF6JOhw71kuehFlGKOhiuAjUqdEB_zwLGU9M7G7BPIFYoD2ssM6qoesjZQcfgo75dWa6XDDZZKlZCC8bEum2WavEJjps5WgHHL6m51dGjWcq2eUazMBzPmMUjH4cp2EbJJ2p1cDs_9581YO2iUUIor_Qiem4M6z7fHn-u02reM-Hi823FwN-3V280Fcq0126CkyQk1-VHiVzspx12rOOhQKlKHoXK02ds6qCytFyOP6S/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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