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we are not supporting tkmedit anymore (and have not for a long time).
Have you tried using freeview (or tkmeditfv which is a frontend for
freeview that takes tkmedit-like options). FV is not available in 5.3,
but you can still use it on 5.3 data.
On 8/4/2023 3:35 PM, Edwards, Vincent wrote:
External Email - Use Caution
Hello,
Our lab has been using Freesurfer 5.3 for it's ongoing longitudinal
study. I attempted to quality check one of our brains using tkmedit -
I usually don't have any issues following our pipeline or running the
tool. This time I received this message:
ERROR: A segfault has occurred. This is not your fault,
: but is most likely an unrecoverable error and has
: made the program unstable.
:
: Please send the contents of the file .xdebug_tkmedit
: that should be in this directory to freesurfer@nmr.mgh.harvard.edu
:
: Now exiting...
:
I'm not sure where the xdebug file is located - it isn't anywhere in
our Freesurfer directory in the server. Where can I find this file,
and how can I fix this error? I've tried trouble shooting with some
solutions I've seen in the archive. We have checked permissions, I use
a PC - not a mac, and I have checked the main freesurfer directories
as well as the directories associated with the brain I want to check.
I have also tried to open other brains in the viewer resulting in the
same error message. Is there a fix for this - ideally, one that
doesn't require switching Freesurfer versions?
Thanks for any help you can provide!
Vincent Edwards
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