External Email - Use Caution
Dear Douglas,
If I have the distance between the nearest point on the white surface and the
center of gravity ( this is d1), and the thickness of each point (d2), then I
can sum d1+d2 and the result is what I need.
Is it possible to extract d1 and d2, as described above?
Really appreciate your kind response.
Alexandra
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve
<dgr...@mgh.harvard.edu>
Sent: 01 August 2023 15:58:52
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Fw: cortical boundary and center of gravity
Achtung, externe Mail!
External Email - Use Caution
If I understand correctly, you want to compute the distance between a given
point (however you compute it) and the nearest(?) point on the white surface?
On 7/28/2023 6:04 AM, alexandra.ko...@uksh.de<mailto:alexandra.ko...@uksh.de>
wrote:
External Email - Use Caution
Dear Freesurfer expert,
Please receive my email as a kind reminder of my previous one: Can I extract
the cortical boundary as a spatial series and the center of the mass in the
grey matter segmented images using the FreeSurfer? Can you please let me know
how to?
Many thanks in advance,
Dr. -Ing. Alexandra Korda
Forschung & Lehre
Zentrum für Integrative Psychiatrie ZIP gGmbH
Campus Lübeck
Ratzeburger Allee 160 I Haus B7 I 23538 Lübeck
Tel.: +49 451 500-98715
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________________________________
From: Korda, Alexandra
Sent: 25 July 2023 08:36:07
To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] cortical boundary and center of gravity
Dear Freesurfer expert,
Please receive my email as a kind reminder of my previous one: Can I extract
the cortical boundary as a spatial series and the center of the mass in the
grey matter segmented images using the FreeSurfer? Can you please let me know
how to?
Many thanks in advance,
Dr. -Ing. Alexandra Korda
Forschung & Lehre
Zentrum für Integrative Psychiatrie ZIP gGmbH
Campus Lübeck
Ratzeburger Allee 160 I Haus B7 I 23538 Lübeck
Tel.: +49 451 500-98715
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________________________________
From: Korda, Alexandra
Sent: 21 July 2023 15:53:02
To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] cortical boundary and center of gravity
I am sorry, I mean the grey matter segmented images. What I wanted to do is to
measure the complexity of the cortical boundary.
I have run an analysis using VBM in which I used the segmented brain MR images,
calculate the center of the mass in these images and the cortical boundary (per
slice, but this is not a problem to use the 3D cortical boundary
spatial-series). Then, I calculated the distances between the center of the
mass and the cortical boundary.
Is it possible to replicate this analysis using the FreeSurfer?
Many thanks for the help.
Dr. -Ing. Alexandra Korda
Forschung & Lehre
Zentrum für Integrative Psychiatrie ZIP gGmbH
Campus Lübeck
Ratzeburger Allee 160 I Haus B7 I 23538 Lübeck
Tel.: +49 451 500-98715
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________________________________
From: Korda, Alexandra
Sent: 21 July 2023 08:24:21
To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] cortical boundary and center of gravity
The distance between the center of the mass in the GM images and the points in
the outer boundary in the GM images.
Thanks for the quick reply.
Dr. -Ing. Alexandra Korda
Forschung & Lehre
Zentrum für Integrative Psychiatrie ZIP gGmbH
Campus Lübeck
Ratzeburger Allee 160 I Haus B7 I 23538 Lübeck
Tel.: +49 451 500-98715
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________________________________
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu><mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
on behalf of Douglas N. Greve
<dgr...@mgh.harvard.edu><mailto:dgr...@mgh.harvard.edu>
Sent: 20 July 2023 22:53:23
To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] cortical boundary and center of gravity
Achtung, externe Mail!
External Email - Use Caution
I'm not sure I understand what you are asking for. Do you want to compute the
distance from a given point in the volume to the closest point on cortex?
On 7/20/2023 7:09 AM, alexandra.ko...@uksh.de<mailto:alexandra.ko...@uksh.de>
wrote:
External Email - Use Caution
Hello FreeSurfer Developers,
I need to compute the distance between the center of the mass in grey matter
images and the cortical boundary. Then, I need this spatial-series to be saved
in a csv. It is also possible to save the cortical boundary series and the
center of gravity and then externally calculate the distances.
I've searched for it in the archived question but I didn't find anything
similar.
Looking forward to your response.
With kind regards,
Dr. -Ing. Alexandra Korda
Forschung & Lehre
Zentrum für Integrative Psychiatrie ZIP gGmbH
Campus Lübeck
Ratzeburger Allee 160 I Haus B7 I 23538 Lübeck
Tel.: +49 451 500-98715
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[https://secure-web.cisco.com/1AOOsqucbGmTeJdM-yAtUPIzv7tfFlnW2B7m613-b26KYyCSrYlBX_VhP42AFNdGq4n0VSmiO77gatk-CUD00nHmqSBOzQByY9VJSjWQTWG7xK9MR6zIBnGSKV-bx-tHI8IoIiLCQg0sVDuvLygsRhv1qoTiz7dkVELQ8kwCJLAAkX5_ziB4qWtnUrRW0GiKzQ2yMzGxcyRdER2KI_553OR0PXp4rO7RWunKpWLPBhmUXGLtXVfJunpeNlhW7mVIX6dONn0kWLOQFh2Fs9stI9gI4AzUKvnAaEcF-VdltlTIpJjfvxBIMfOXpRjAp_AhE2PTMTACWq1QrjYxkCPyWagMwtQ6wAmu0pX3lpGnYz8c/https%3A%2F%2Fmedia.uksh.de%2Femailfooter%2Fukraine_202210.jpg]<https://secure-web.cisco.com/1sCPy2VI9VIeqBFD-78XnzcpPLre5X30Ap7YIpu2wGcBlcXNJ8315mpqy4n-nUQ9hSmSkBr0NL_gYEhlQ2iE3SL__EfeAJaI9AUhvbcWFBDbz-8m7SUkgRv29AKVxDRfnMMGlmllm5bDX-9Z9xDE-ZhduCbbQ4QsN8TrxggKHBxHe2rK0UFwRaSuXxJ9F3jGUglXPX6DhiGdi1h-wqt9mff5qxF10TRz8u-QruW-niq7uQ6V0Zv2eCWFyx1mXnJ38brB2PIsd68xb0U4faudfVZZlhDEXXVORS3cr1Mx_Y4HR9KjDTNhZizbN-oy7zDGWW27qtWgp63tVysWzEoKfP5vJxwOZISFPFJAKyaV56BI/https%3A%2F%2Fwww.uksh.de%2Fukrainehilfe.html>
UKSH hilft Ukraine: Wir machen weiter. Helfen Sie uns, zu helfen!
Unterstützung für die Menschen in und aus der Ukraine.
UKSH-Gutes tun!-Spendenkonto zur Aktion
Empfänger: UKSH WsG e.V.
IBAN: DE75 2105 0170 1400 1352 22 | BIC: NOLADE21KIE
Angabe bei Ihrer Überweisung im Verwendungszweck:
FW14042: UKSH hilft Ukraine
Spenden via PayPal: Spenden per
PayPal<https://secure-web.cisco.com/19zuU7kAXVZctDul3KKV_Or91foAK2DNNZElMPDJPSvwoOtrrR9Tt09_HfW8gGD-H8pKudGK8XkoftrCcVultIJ1-SIJnGjanKUs-x085NA66aVV-4UbCrlHfCgHd31FW26ZUDtPs_CxcCuXrD7nJJ7vheZ0lh2LuqxAjDqx77W3lU8s6pu3i-LBAXVEbrpOYhIvB-K1VqdOXzxcqgmY6CUD9ULPwDBZIvBtqL3vm_qUDK9kJ1p55y1TTN5WRZKewi9NCdAukWJYmVWKAp0DY9I6ET98QtwVBHzVuYf9DS6yhqHprpebnLVv2B4XegpJlmwjDcovxL64P_cARgZrLzrK_pjiBQ5uA5xiv0-jOMlA/https%3A%2F%2Fwww.paypal.com%2Fdonate%2F%3Fhosted_button_id%3D2ZTDYKAN8L6NY>
Alle Infos: MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be
http://secure-web.cisco.com/107AcTFhVXfuW_jeokvSk1gliCiKU5r-gBsqqqynAatcTCx3Pf2HK2uE9m0c6IgzYBHmnJFNE9QrIZNJLOpuEwEAICL6cTxR-GSDug0GZuljJWnjFzfpP7rAijdftt7hbxPYuaZWt1WwpL7R6LHRfwrMrJ08_KUSmpjG6DllllQnGMHsF3AOwc0OXn33jq23hBAy-M-n1JX_x6jMZySrxqV_kc7oOGZ5edgrl6zqNzPUOMoXF4UhqP5-vH4g2pTqWA0Zu2d_S47g4HO57oOIm1u6MvWaSTxXmv0jFZdFyEQtVIjUkHognEdxkXVlf1GnBeExfNPo4GjheHR_pX-MPdw/http%3A%2F%2Fwww.uksh.de%2Fukrainehilfe<http://secure-web.cisco.com/1Yp2GziezQ--zorAWLWgh3JZPDvYVbGWcPyrW9Oj_shCvKtOidmp3nrHG565eyhbi1hP_uJ-WkvXt2CmAHbMCFCo_20UZOoqpSsJP5kG7ZXRALdlmpB9KsS7LGDEosN0poUnCOUTsobx2Y6TT70eIWkBdYIfTRXYM-rvkMrpSFfipMD8PDL8wY-QNuhX8cO5eaeO8_F9Piuq5KQWtkzI6WLNnE4kLZMVznfQqVpkoAL91s91_p7dMbWwvMSl2e6t0Qonx77sqPsmK2AknQ1HvMn9YC6i6peIPeAFciCTePjQ6iyETkxteXx7KGBMuC7ehab00EhcfUwbue8qIigRgL34pYGRJc-MyFmJ-Rc4ABcs/http%3A%2F%2Fwww.uksh.de%2Fukrainehilfe>
[UKSH logo]
Universitätsklinikum Schleswig-Holstein
Rechtsfähige Anstalt des öffentlichen Rechts der
Christian-Albrechts-Universität zu Kiel und der Universität zu Lübeck
Vorstandsmitglieder: Prof. Dr. Dr. h.c. mult. Jens Scholz (Vorsitzender/CEO),
Peter Pansegrau (CFO), Corinna Jendges (COO), Prof. Dr. Thomas Münte, Prof. Dr.
Joachim Thiery
Vorsitzender des Aufsichtsrates: Guido Wendt
Bankverbindungen:
Förde Sparkasse IBAN: DE14 2105 0170 0000 1002 06 SWIFT/BIC: NOLA DE 21 KIE
Commerzbank AG IBAN: DE17 2308 0040 0300 0412 00 SWIFT/BIC: DRES DE FF 230
Gemeinsam Gutes tun! Spenden: Alle UKSH-Spendenmöglichkeiten unter MailScanner
has detected a possible fraud attempt from "secure-web.cisco.com" claiming to
be
http://secure-web.cisco.com/18mbJgwT5CeMX5-RC1HJ946KokUDhEqf9E5CPzBm5rxEvfhKW1EdS4o_zwLz9ADNOXCnGcFUHxGFJPX0I6mFSwYvZ3MTFWnmGPXIB1wJqam46n008nk7OeM4lFyQSB27CbfgRIDnCqZ897a7M4qqZ0FTs70AKUUABqxpJmctwv-6NVcsrJ8CQBnBdOFjn98OWxYkQ0VB-dNovRBUxWdypFrAWq61m8KasWUpE1UfzijBqX3gPhn6XYk0qBV-8420t-IZQEWVA0R_Gtt9P7ZMpJWE7doUGTbbReHwqOjJTgNvW7Xt4ybcSd3CE-YPo0CZRz0EVOLS8ASJRgXI_CxxZuQ/http%3A%2F%2Fwww.uksh.de%2Fgutestun<http://secure-web.cisco.com/1PM4Bl_XCW2TI9S7xBSfxsI0bNs2hyeV1XHLSi6-EhvbIpxA6-rm7GYhQCv3C6RzRtwqU53xkH2nEhfXhLU26qFWJm5hL9r2BaPc5lIxKyB3oHzqCGdoTmK2caRnOse3RcgamYPPBn14O9KYQFAiMk8bJsip4EmRvk5WpZoqL1HVGAVguD1I23cLPEjOdnW6Ii3vyndVxPnsU8UcXBLMlUyuMwGK_0UMnytLy15rtkpBgoogxxUeyT1MxcNE3envtqz6tGqezFCjceclI4tThG7G_txzhQTYuidvDFRDqjQCeEyxy1JFfrDlCKyAnoqjWmyHHUUEKaUQRknCt-dPd_K1-MzBO1lbrY0TKs_gYwd8/http%3A%2F%2Fwww.uksh.de%2Fgutestun>
Spendenkonto: Förde Sparkasse IBAN: DE75 2105 0170 1400 1352 22 | BIC:
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MailScanner has detected a possible fraud attempt from "secure-web.cisco.com"
claiming to be
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[https://secure-web.cisco.com/1c-1jCdooGfm15ph0te7LLUN1QcrG0E41R4fFgm-J6JvWRaeRlKTtfr_ZNK_dPq8HF1uB_6FzguDWb2eG6thnWoBsBixoTnhRCany3GvFYqFfdDgZuXqRKkfXHz7_iv4Eb-YBl0WdiW2hu25ztCf7FvZ_8kuuUwzagiSe5JmT4S-2kCEjDwaKaqNVIw4b0AzklSRlxm1zSgdOR_u-5M7ZPI67Xqng4HV5XzaNWqWbO-IbJrbBIJzWccRc35k6-v9x45yzprmKKjYDVB5kyN-v90mp7TUhYH3AYNW6hK2yi-FRuoliGHEAH0ZCTdiyV-xrNsWCHvZCPehnOuIrElBhVQ/https%3A%2F%2Fmedia.uksh.de%2Femailfooter%2Fukraine_202210.jpg]<https://secure-web.cisco.com/1GbtrhEQvSekqoWitd-5xI87lJmaSrk8q7MpmQpvfaChOVR9KuuW98kF5hegQhw0BdIc3r5k5Q4jcEfutOXPJZdKdpPWRHeiTjBRcEjXE1CNWXcKkKj-vxwMGPUKzzYT1v5a1bRnur_ZJehRQL2GrRwSOM4LEdsLDVDGfKfrG9NDV4VzFgfmUuk_T59k0fV8VQaq5QTqPGkmmWB4PqjBZeDTccLqp23OsBBw3ss1KkJZ6hSelp6aP3RJBo4NPxa52mnyIEB2cYPaYIdcD8RsLEb6MCfd7j-okE28QLKMpp2ny4ETIgl4IZxRCGInLMGInLAZ4ly7Kmut9JxtmjvQ02g/https%3A%2F%2Fwww.uksh.de%2Fukrainehilfe.html>
UKSH hilft Ukraine: Wir machen weiter. Helfen Sie uns, zu helfen!
Unterstützung für die Menschen in und aus der Ukraine.
UKSH-Gutes tun!-Spendenkonto zur Aktion
Empfänger: UKSH WsG e.V.
IBAN: DE75 2105 0170 1400 1352 22 | BIC: NOLADE21KIE
Angabe bei Ihrer Überweisung im Verwendungszweck:
FW14042: UKSH hilft Ukraine
Spenden via PayPal: Spenden per
PayPal<https://secure-web.cisco.com/1qqn5-FsazWSzVLFJj5N5gI8aYWYmwGQBD3FajXzTtKjkZRKPUD_zQhaiBZi25G_TdgcPAfPYqrsVTIxhC1F5x-l3LaR6hhVheolQwQooGdKlYNiLf4SNTPXaoImt4AxcuyWNW7ouOUwcOR9YI6VkhsXwODRYeJY2T1myV2QXyb_clHIpOIDi9kQkbExSCN1-dKS8Aao3kCDXbt9ZTmSOql70rbVw0mwUWPEBl7-Kbl3rDJNwUNuzDFxqWMl1ESokdlp44oMS7uA4Fsbu_ObsbboG3DFLfapF7z5D7Na1KO8CnQnbShIHoebtp1EIRpYogVOXQknq4cBdjHjI9gaySlomH6e4onEQtg1DB8b6Pio/https%3A%2F%2Fwww.paypal.com%2Fdonate%2F%3Fhosted_button_id%3D2ZTDYKAN8L6NY>
Alle Infos: MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be
http://secure-web.cisco.com/107AcTFhVXfuW_jeokvSk1gliCiKU5r-gBsqqqynAatcTCx3Pf2HK2uE9m0c6IgzYBHmnJFNE9QrIZNJLOpuEwEAICL6cTxR-GSDug0GZuljJWnjFzfpP7rAijdftt7hbxPYuaZWt1WwpL7R6LHRfwrMrJ08_KUSmpjG6DllllQnGMHsF3AOwc0OXn33jq23hBAy-M-n1JX_x6jMZySrxqV_kc7oOGZ5edgrl6zqNzPUOMoXF4UhqP5-vH4g2pTqWA0Zu2d_S47g4HO57oOIm1u6MvWaSTxXmv0jFZdFyEQtVIjUkHognEdxkXVlf1GnBeExfNPo4GjheHR_pX-MPdw/http%3A%2F%2Fwww.uksh.de%2Fukrainehilfe<http://secure-web.cisco.com/1GMSEEdIJDYK-iTo2U1y6kXFbgAqXqHOd5yiq-Q-vEy-NkLSfm0uLIM-o_RI_UG0LOaRtN7k3oVMJEAwdiMGAeTws7Zf879tDoLdbAZDUquVsofC5B0OMSPv_NRkcfauePWt8JrSwGGl5s_XtNCR8K9-n_y4kEA6cqWpT33Mqa3QmGUtYHLwgwNQPwFcsZYGTyxVCm5A24aAiR9pYV90_gOmN4Oie-bKyCs_Z_0nPRtZXTlgpU8x_jILCxClDvRvt4B4DYXMwB4hVm2-PNn4ySaHB4PQc_4HSBb2N5OrevASVEa8UHNoICroOQMvztFGZMVo2qh2I1FyGIO03go-lIQ/http%3A%2F%2Fwww.uksh.de%2Fukrainehilfe>
[UKSH logo]
Universitätsklinikum Schleswig-Holstein
Rechtsfähige Anstalt des öffentlichen Rechts der
Christian-Albrechts-Universität zu Kiel und der Universität zu Lübeck
Vorstandsmitglieder: Prof. Dr. Dr. h.c. mult. Jens Scholz (Vorsitzender/CEO),
Peter Pansegrau (CFO), Corinna Jendges (COO), Prof. Dr. Thomas Münte, Prof. Dr.
Joachim Thiery
Vorsitzender des Aufsichtsrates: Guido Wendt
Bankverbindungen:
Förde Sparkasse IBAN: DE14 2105 0170 0000 1002 06 SWIFT/BIC: NOLA DE 21 KIE
Commerzbank AG IBAN: DE17 2308 0040 0300 0412 00 SWIFT/BIC: DRES DE FF 230
Gemeinsam Gutes tun! Spenden: Alle UKSH-Spendenmöglichkeiten unter MailScanner
has detected a possible fraud attempt from "secure-web.cisco.com" claiming to
be
http://secure-web.cisco.com/18mbJgwT5CeMX5-RC1HJ946KokUDhEqf9E5CPzBm5rxEvfhKW1EdS4o_zwLz9ADNOXCnGcFUHxGFJPX0I6mFSwYvZ3MTFWnmGPXIB1wJqam46n008nk7OeM4lFyQSB27CbfgRIDnCqZ897a7M4qqZ0FTs70AKUUABqxpJmctwv-6NVcsrJ8CQBnBdOFjn98OWxYkQ0VB-dNovRBUxWdypFrAWq61m8KasWUpE1UfzijBqX3gPhn6XYk0qBV-8420t-IZQEWVA0R_Gtt9P7ZMpJWE7doUGTbbReHwqOjJTgNvW7Xt4ybcSd3CE-YPo0CZRz0EVOLS8ASJRgXI_CxxZuQ/http%3A%2F%2Fwww.uksh.de%2Fgutestun<http://secure-web.cisco.com/1iTGRxZRGsdr5C68yWO5ooGyjnfnrzrzmFKXVdriyUgdCdn2km7ZULFKxpbLpNbuIwfgK5KZChavKDNtcJerVPQ-dqgYXyXAUU_hAnmVEBdbq9JlIFbDBPz1QPyKDBw58HQhaHgMQhOkf3mjPDyLYDm93MYKm_uFm61VVwjw60gdQR7UH_HdCsUsWbuXLMhnEOwecfyRN1l4nTObbO-KDkUo_ka9Cfk5ht2gcqn85SfFmpMOs0f-7dYR6kqTcxVOCSb8_oMXtAMg_6o1AAQfGIN4GvBwpv-sBWANRCQfDubwuVx3Ehay79TBYBYfVZCRzm0pE4X0yj2DFn6Ctmnq57A/http%3A%2F%2Fwww.uksh.de%2Fgutestun>
Spendenkonto: Förde Sparkasse IBAN: DE75 2105 0170 1400 1352 22 | BIC:
NOLADE21KIE | Empfänger: UKSH WsG e.V.
Diese E-Mail enthält vertrauliche Informationen und ist nur für die Personen
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Sollten Sie nicht der bestimmungsgemäße Empfänger sein, bitten wir Sie, uns
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MailScanner has detected a possible fraud attempt from "secure-web.cisco.com"
claiming to be
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UKSH hilft Ukraine: Wir machen weiter. Helfen Sie uns, zu helfen!
Unterstützung für die Menschen in und aus der Ukraine.
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Universitätsklinikum Schleswig-Holstein
Rechtsfähige Anstalt des öffentlichen Rechts der
Christian-Albrechts-Universität zu Kiel und der Universität zu Lübeck
Vorstandsmitglieder: Prof. Dr. Dr. h.c. mult. Jens Scholz (Vorsitzender/CEO),
Peter Pansegrau (CFO), Corinna Jendges (COO), Prof. Dr. Thomas Münte, Prof. Dr.
Joachim Thiery
Vorsitzender des Aufsichtsrates: Guido Wendt
Bankverbindungen:
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