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This is the error from log:
Reading source surface reg
/media/sf_T1/freesurfer_results/HCA9679715_V1_MR/surf/lh.sphere.reg
error: Cannot allocate memory
error: TAGskip: tag=116798, failed to calloc 116799 bytes!
The TAG number looks wrong. I’m wondering how you created
/media/sf_T1/freesurfer_results/HCA9679715_V1_MR/surf/lh.sphere.reg?
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of MANSSOUR Wassima
Sent: Tuesday, August 1, 2023 2:52 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] mris_preproc error: cannot allocate memory
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Hello M.Douglas,
I’m running the following command: mris_preproc --fsgd FSGD2.fsgd --target
fsaverage --hemi lh --meas thickness --out lh.uci_nuci.thikness.00.mgh.
Please find attached the log file.
Thank you,
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
On Behalf Of Douglas N. Greve
Sent: Tuesday, August 1, 2023 3:52 PM
To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] mris_preproc error: cannot allocate memory
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That should be enough RAM. What is your command line? Can you send the log file?
On 8/1/2023 7:52 AM, MANSSOUR Wassima wrote:
External Email - Use Caution
Hello FreeSurfer Developers,
I'm conducting the Surface Based Group Analysis explained on the tutoriel
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but I keep getting the error: "Cannot allocate memory" while running the
mris_preproc command.
I'm using the data of 355 subjects stored on an external hard drive, and a pc
of 23G RAM, but it stops at the 334 subject.
I've already tried with a windows and mac of 16G RAM and got the error, so
moved to the other one but still getting the same issue.
Does anyone have any thoughts on how to trouble-shoot this? or any other
alternative solution to run the mris_preproc on all the subjects?
FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0
Platforme: Debian 3.16.7
Thank you for your help,
--
Wassima MANSSOUR
Master Student at INSEA Rabat
M2SI - Information Systems & Intelligent Systems
IMRB intern-France
wmanss...@insea.ac.ma<mailto:wmanss...@insea.ac.ma>
wassima.manss...@u-pec.fr<mailto:wassima.manss...@u-pec.fr>
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