External Email - Use Caution Hello FreeSurfer experts,
I'm attempting to follow the longitudinal pipeline, as described on the longitudinal processing tutorial (https://secure-web.cisco.com/1vfvhhwIW62eUqagABMhB_WTdPL428NuWWIuhlLA1wradeuw0s2ojnD8IvCB-0fL80s5FWT9oOODXD26Oz-H13kTKqy1ut8IbbqQiG81lVKLr-3z_w68anmwIsuUdWmG_OJpkZywCJN3-PnEybXNPicGdmeGiNpWYGED9REmas2OeqARXipaxpk7sDOBTWl4YLCKpGPjPI1eAirqsi24HMVw7Gx5MbrOvsS_q2k_dbthdVmHrXlSVCgo44QKin8AM_5IMNgiY-bNB2fITmWWYonH3C4joOgKrLWbRnDVsUE2aptIIoBuXudGluHXuFgr3tfpwPl51pH8DrnSuHNzHHg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FLongitudinalTutorial_tktools), while creating a within-subject template, I get the following error when I run this command: recon-all -base Subj03_template -tp /Users/bernis/Calismalar/results/Subj03/Subj03_TO/Subj03_TO.nii -tp /Users/bernis/Calismalar/results/Subj03/Subj03_TS/Subj03_TS.nii -all error: mghRead(/Users/bernis/Calismalar/results/Subj03_TS.nii/mri/rawavg.mgz, -1): could not open file Does anyone have any idea how I can resolve this problem? 1) FreeSurfer version: v7.2.0 2) Platform: MacOS Big Sur release 11.6.7 3) recon-all.log: see attached Best regards, [https://secure-web.cisco.com/1FcV40hswwSeEl9bym6WfCPck8eyt1yR9LF87hH45tP9coWD2ZhvLkYN6SD16e20-Ren6bok-I7eL3RIRYISyf3-zmOo642UpaVErmtqBeVDvZHy2yDt_Tpgc3yFo8cmF4OpPtQDTUgOgKPQ3HR4lb7x5-CMRCSIXNpbRfPn5iPS0GulXvuYeTbPxZ3YCzgRt5ipI4qLPVS1SINwfuxGhOxSJ9jZYm4jXqelntJ6L5j-GauvHui6V1FS7eXGRMcJUpT12SosVIeE6AcM0NE9WZY52e_U_q-vij6fRlEfdSna7GeOG-uE9rg7_tQbWFaSkY2H5zXFBmHeh9zDMIMEUVA/https%3A%2F%2Fwww.acibadem.edu.tr%2Fassets%2Flogo%2Fen%2Fblue_02.png]<https://secure-web.cisco.com/1gg-VeXoq9W6DUMYRFkUMcIADYHC7qN0RuiQhEnLA0K-N7FkhQpt73nBB0hqvWCfTcnzLJJUHPTFop1ByTQgbB7ncr4Th2ZaMh4TWV1eWez6IdsSLlLm39N1C9nKyqasiAf0MfpForwWuNq6Y-1L15KX4uTnLbpVMxHrASxaXMPKaPtWqN09MwGuHZekFcF0RlBsMg1oU5Ii8ut-IuLNWw9Cc_h1elCxs2O9EYsTMje0YWmjbzB46XIDfbKu7hK49UwOHk3A_MpEdxhIYpY5YRKZ7zhr1jJWy_-_oXD7XHSPjzGWVeD7sSVBsX5lH4D0IIaPSAediUQbswmH3mzyLhw/https%3A%2F%2Fwww.acibadem.edu.tr%2F> Bernis Sütçübaşı Assist. Prof. Faculty of Humanities and Social Sciences/Department of Psychology Kerem Aydınlar Kampüsü Kayışdağı Cad. 32 Ataşehir 34752 İstanbul Tel 0 216 500 36 05
recon-all.log
Description: recon-all.log
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