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Hello,
The following command
trac-all -c dmrirc.example -bedp
always exits with the following error.
{
WARN: Running bedbostx locally - this might take a while
WARN: It is recommended to run this step on a cluster
bedpostx_mgh -n 2 -model 1
/home/developer/Desktop/DATA_VB/Data/TRACULA/trc/Sub_01/dmri
/usr/local/freesurfer/7.4.1/freesurfer/bin/bedpostx_mgh: 128:
/usr/local/freesurfer/7.4.1/freesurfer/bin/bedpostx_mgh: Syntax error: "("
unexpected
}
The processing doesn't even get started. It exits immediately
I tried freesurfer 7.2 and 7.4.1 versions on virtual box thinking there might
be some problem with the bedpostx_mgh source code. But it does the same with
both the versions.
Trac-all with -prep argument runs for a while and exited with
{
Pre-sorted training .trk file detected
INFO: Rejected 114 streamlines for straying off mask
INFO: Rejected 0 streamlines for reversing direction
INFO: Have 19886 total streamlines (min/mean/max length: 60/88/115)
Processing pathway 29 of 42...
INFO: Have 19886 non-truncated streamlines (min/mean/max length: 60/88/115)
Computing path histograms
INFO: Total streamline volume is 25477 voxels
Finding outlier streamlines
Updating streamline distance ranking
INFO: Split streamlines into 25 segments
Computing prior on underlying anatomy (all streamlines)
Killed
Linux developer-VirtualBox 5.4.0-150-generic #167~18.04.1-Ubuntu SMP Wed May 24
00:51:42 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
trac-preproc exited with ERRORS at Wed Jul 26 18:08:00 EDT 2023
}
-Prep getting killed because of insufficient memory??
Can someone please help.
Thanks
Regards
Tilak
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