External Email - Use Caution
When you do the corrections for multiple comparisons, you will get a
file with "ocn" in the name. This is the output cluster number where the
vertices have values 0 to NumberOfClusters. You can use this with mri
_segstats to extract the values from the input subjects, eg,
mri_segstats --seg ocn.mgh --i thickness.lh.stack.tp1.mgh --avgwf
thickness.lh.stack.tp1.dat --excludeid 0
The output thickness.lh.stack.tp1.dat will be a table of data where each
row is a subject and each column is a cluster matched to the .sum file
It is assumed above that thickness.lh.stack.tp1.mgh is the stack of
thicknesses from all your subjects for time point 1, you can do the same
for tp2
On 4/20/2023 12:56 AM, Eszter Boros wrote:
External Email - Use Caution
Dear FreeSurfer Team,
We are doing a longitudinal analysis with Freesufer 7.1.1 (two-stage
longitudinal model), and we would like to extract the Cortical thickness
values from the significant clusters (before and after treatment changes) to
visualize the individual values/changes.
I am wondering how I can do that?
Please let me know if you need any more information.
Thank you for your answer in advance!
All the best,
Eszter Boros
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://secure-web.cisco.com/1RXSwMpePfttiac-WPw6wZUBhOzPDlNX3mHu_RCYTudGSMhfxcBTtzQC8xdTTJNRpQn942VFkqqkKp3NeZW49_xlt1re_vVgkYMt09aYpMyMjQEvu4B7Q0aMCi9IAYDWUPmw07uv2zPFRLOCjDP1p2B4ano9iSr_evq3DpiUHzo_N5ocQzDCMG6R-nWh1gYMCFejvul0Jtq579rcXsPzCtFFwyuiTZIPJ-PzAyfzrqt25mdwpKvBl5Ix41z9yRpuwMFu6uW4E7CcGJq1TPlLMzw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Mass General Brigham
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline
<https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.
