External Email - Use Caution
Recently FSL has changed the location of the bin directory they want you to
use.
The FreeSurfer setup script adds the old binary folder to the PATH not the
new one. This is causing quite a bit of trouble for me. I made changes to
the FreeSurferEnv.sh. I removed lines 440-446 and in its place I put the
following. The echo line probably needs to be changed but it works.
if [ -d $FSL_DIR/share/fsl/bin ]; then
> export FSL_BIN=$FSL_DIR/share/fsl/bin
> elif [ -d $FSL_DIR/bin ]; then
> export FSL_BIN=$FSL_DIR/bin
> else
> if [[ $output == 1 ]]; then
> echo "WARNING: $FSL_BIN does not exist.";
> fi
> fi
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Mass General Brigham
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline
<https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.
