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Hi FreeSurfer Developers,
I'm trying to use freeview to load the rh and lh inflated surfaces together
with overlays and overlay masks. I'm able to this separately and successfully
for each hemisphere, but when I try to load the hemispheres together, both of
the overlay_mask files show up on the left hemisphere and not the right
hemisphere. The following is the command I'm using:
freeview -f
${SUBJECTS_DIR}/${SUBJECT}/surf/rh.inflated:curvature_method=binary:overlay=rh.phase.mgz:overlay_custom=1.57,153,0,0,2.20,255,0,0,2.83,255,255,0,3.46,0,255,255,4.08,0,0,255,4.71,0,0,102:overlay_threshold=1.57,4.71:overlay_color='clearlower','clearhigher',colorscale:overlay_mask=${SUBJECTS_DIR}/${SUBJECT}/label/rh.ve_20pct.thresh.label
\
-f
${SUBJECTS_DIR}/${SUBJECT}/surf/lh.inflated:curvature_method=binary:overlay=lh.phase.mgz:overlay_custom=1.57,153,0,0,2.20,255,0,0,2.83,255,255,0,3.46,0,255,255,4.08,0,0,255,4.71,0,0,102:overlay_threshold=1.57,4.71:overlay_color='clearlower','clearhigher',colorscale:overlay_mask=${SUBJECTS_DIR}/${SUBJECT}/label/lh.ve_20pct.thresh.label
I've tried running this with 7.1.1 and 7.2.0 on Mac 10.15.7 and Linux w/Ubuntu
22.04 but still run into the same issue.
Let me know if there's something I'm missing or if there's a better way to
troubleshoot.
Thanks!
Jewelia
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