In 7.2 it appears to be there (and in 7.3 and in dev and in 7.0 and 7.1) case "-autorecon2-volonly": set DoGCAReg = 1; set DoRemoveNeck = 0; set DoSkullLTA = 0; set DoCANormalize = 1; set DoCAReg = 1; set DoCALabel = 1; set DoSegStats = 0; set DoNormalization2 = 1; set DoMaskBFS = 1; set DoSegmentation = 1; set DoFill = 1; breaksw
On 3/24/2023 9:57 AM, Christopher Markiewicz wrote: > External Email - Use Caution > > Hi all, > > This is a duplicate of a bug report on GitHub > (https://secure-web.cisco.com/1C5EnDIMtZh6wk0SJMqe8l166ycKmSdnL5atT3CIHDPAY15Ixtf93Rif0FmPFCZaftXbqlhK5AbXT22OXXCJq9JgIiSOyglr8IF1n3lOAzrtCIHcr8C2aLwqsXcMciJwp9Mz2DV4vmcWjm2v_xTUmw6hoea4u37a4hkUyIkSRKIBbOEC9mKcGdJ41Nbz86rmDYbEm3v5pV6zuR3zISglz0_aPe4hJhmj_y7BHipJWdwr3J3pwKPc5BT5WbnmtOEJ6hBkSswM8xHN-3ZfID-bPa2VEltISdFH8ITDhpQJKlPlhEYwtkSxcoWugX9kNCGiWbWsbTqR4PbpJPvp4qp4e5w/https%3A%2F%2Fgithub.com%2Ffreesurfer%2Ffreesurfer%2Fissues%2F1081): > > `DoGCAReg` was removed from `-autorecon2-volonly` in commit > 4b9af5fc8c559e944400b885ef89f3682f94e0da, but this seems unrelated to the > commit message. It's still in `-autorecon2`. Is there a reason it shouldn't > be present, or was this a mistake? > > This issue affects versions 7.3.0+. Apologies for doubling up if you saw it; > my impression is the mailing list is more actively monitored. > > Best, > Chris > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
