Dear Fidel, This is really weird… that’s essentially the last step. I you eg didn’t have writing permissions, you’d get an error. Would it be possible to share the data, so I can try to reproduce the issue on my end? Cheers, /Eugenio
-- Juan Eugenio Iglesias http://www.jeiglesias.com From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of fidel vila <fidelv...@gmail.com> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Date: Wednesday, March 15, 2023 at 2:29 PM To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] EasyReg usage External Email - Use Caution Hi, I checked the archive for any pointers about specific use instructions for EasyReg and read the wiki page. I would like to register three T1w acquisitions on three planes (Axial, Cor, Sagittal). This was my first attempt: mri_easyreg --ref [myimageAXIAL.nii] --flo [myimageCOR] --ref_seg [filename_tobecreate_seg_not_runpreviously] --flo_seg /[filename_tobecreate_seg_not_runpreviously] --ref_reg /[filename_tobecreate] The command run and did generate the segmentation files but froze here: Deforming and writing to disk Computing backward field Deforming reference image Saving deformed reference image I could not find a log file. Any suggestions? My plan was to use EasyReg on this registered image and register it to the Saggital acquisition, but maybe there is a way to do that registration at once? thanks for any pointers and for putting together such amazing tools, Fidel
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