everything except skull and scalp are in the aseg.stats file. You can
get skull by running samseg, eg,
cd subject/mri
samseg --i orig.mgz --o samseg
there will be a stats file in the samseg folder with skull volume in it
On 2/1/2023 5:00 AM, 江一川(JIANG Yichuan) wrote:
External Email - Use Caution
Dear Experts,
How can I extract scalp, skull, csf, gray, and white volume, seperately.
Best wishes,
Yichuan Jiang
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