External Email - Use Caution Dear TRACULA team
I got an error in pre processing that "Writing output files to /gs/gsfs0/users/helena_blumen_lab/TRACULA/30285/dlabel/syn/lh.cst_avg16_syn_bbr_* Writing spline volume to /gs/gsfs0/users/helena_blumen_lab/TRACULA/30285/dlabel/syn/lh.cst_avg16_syn_bbr_cpts_7.nii.gz Segmentation fault (core dumped) Linux cpu-769.cluster.local 4.18.0-305.19.1.el8_4.x86_64 #1 SMP Tue Sep 7 07:07:31 EDT 2021 x86_64 x86_64 x86_64 GNU/Linux" I checked Freesurfer mail and found it could happen when older version are used but I use 7.2 I have attached the configuration file. Thank you for any suggestions. This happened for another ID as well but for a different tract. I have been using similar configuration files and trac-prep finished without error for my other subjects Regards Oshadi
setenv SUBJECTS_DIR /gs/gsfs0/users/helena_blumen_lab/TRACULA/ set dtroot = /gs/gsfs0/users/helena_blumen_lab/TRACULA/ set subjlist = 30285 set runlist = 1 set dcmroot = /gs/gsfs0/users/helena_blumen_lab/TRACULA/ set dcmlist = 30285/20190619_600891701_701_WIP_110_DTI66d_2mm_SF3_SENSE_110_DTI66d_2mm_SF3_SENSE.nii set bvecfile = 30285/bvecs.txt set bvalfile = 30285/bvals.txt set dob0 = 0 set doeddy = 0 set intrareg = 3 set intradof = 9 set intrarot = 90 set interreg = 5 set intertrg = /public/apps/freesurfer/7.2.0/trctrain/hcp/MGH35_HCP_FA_template.nii.gz set segname = aparc+aseg set usethalnuc = 0 set usemaskanat = 1 set thrbet = 0.3 set trainfile = /public/apps/freesurfer/7.2.0/trctrain/hcp/trainlist.txt set nstick = 2 set nburnin = 200 set nsample = 7500 set nkeep = 5 set reinit = 0
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