External Email - Use Caution Hi! I am having issue with mris_ca_label while trying to apply the Yeo 2011 atlas to single subject surfaces. Specifically, I am getting "surface doesn't match" from mrisReadTriangleFile and "could not read spherical coordinate system" from mris_ca_label. lh.smoothwm and lh.sphere.reg both exist in the specified places. It does not matter from where I run the below command. I also tried adding -sdir, which did not change anything. It happens with v5.3 and v7. I have seen a couple of bug reports on this specific error, but no solution other than re-running recon all, which is not an option in my case. Any advice would be appreciated. Thank you! Caspar
mris_ca_label -l /home/local/GWDG/cschwie3/ukme11/cschwie3/patients/ecog/9152127433/recon/label/lh.cortex.label \ 9152127433 lh /home/local/GWDG/cschwie3/ukme11/cschwie3/patients/ecog/9152127433/recon/surf/lh.sphere.reg \ /home/local/GWDG/cschwie3/ukme11/common/Software/YeoParcellation/lh.Yeo2011_17Networks.gcs \ /home/local/GWDG/cschwie3/ukme11/cschwie3/patients/ecog/9152127433/recon/label/lh.Yeo2011_17Networks_N1000.annot $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /home/local/GWDG/cschwie3/ukme11/common/Software/YeoParcellation/lh.Yeo2011_17Networks.gcs... reading color table from GCSA file.... average std = 8.4 using min determinant for regularization = 0.705 0 singular and 246 ill-conditioned covariance matrices regularized mrisReadTriangleFile(/home/local/GWDG/cschwie3/ukme11/cschwie3/patients/ecog/9152127433/recon/surf/lh.sphere.reg): surface doesn't match /neuro_tools/freesurfer/subjects/9152127433/surf/lh.smoothwm No such file or directory mrisReadTriangleFile failed. No such file or directory mris_ca_label: could not read spherical coordinate system from /home/local/GWDG/cschwie3/ukme11/cschwie3/patients/ecog/9152127433/recon/surf/lh.sphere.reg for 9152127433 No such file or directory
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