External Email - Use Caution
Dear experts,
I would like to run mri_glmfit in a group analysis. However, I met the
following error when I added the medicationload as variable in my fsgd file.
Since I have 305 subjects and only 75 of these have medication load, it seems
to this variable includes too many zero. Just I guess.
The error:
ERROR: matrix is ill-conditioned or badly scaled, condno = 1e+08\
\
\
--------------------------------\
-------- ERROR: READ THIS -----------------\
--vvvvvvvvvvvvvvvvvvvvvvvvvvvvvv-----\
Possible problem with experimental design:\
Check for duplicate entries and/or lack of range of\
continuous variables within a class.\
If you seek help with this problem, make sure to send:\
1. Your command line:\
mri_glmfit --y lh.volume.BDHC3Study.10.mgh --fsgd FSGD/BDHC3Study.fsgd --C
Contrasts/HC3-BD3.mtx --C Contrasts/BD3-HC3.mtx --surf fsaverage lh --cortex
--glmdir lh.volume.BDHC3Study.10.glmdir \
2. The terminal output of this program (ie, everything it prints to the
screen)\
3. The FSGD file (FSGD/BDHC3Study.fsgd)\
4. The design matrix lh.volume.BDHC3Study.10.glmdir/Xg.dat\
Attempting to diagnose further \
SumSq: Min=6.368664 (col 8), Max=16.261612 (col 7)\
... could not determine the cause of the problem\
--^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^----\
}I attached my terminal output, fsgd file, and design matrix Thanks Yuan
BDHC3Study.fsgd
Description: BDHC3Study.fsgd
{\rtf1\ansi\ansicpg936\cocoartf2578
\cocoatextscaling0\cocoaplatform0{\fonttbl\f0\fnil\fcharset0 AndaleMono;}
{\colortbl;\red255\green255\blue255;\red228\green225\blue224;\red0\green0\blue0;}
{\*\expandedcolortbl;;\cspthree\c91229\c90457\c90129;\csgray\c0\c90000;}
\paperw11900\paperh16840\margl1440\margr1440\vieww11520\viewh8400\viewkind0
\pard\tx560\tx1120\tx1680\tx2240\tx2800\tx3360\tx3920\tx4480\tx5040\tx5600\tx6160\tx6720\pardirnatural\partightenfactor0
\f0\fs24 \cf2 \cb3 \CocoaLigature0 yuan@macbook-pro-4 struct % tcsh
runGLMs_Step2.sh BDHC3Study\
gdfRead(): reading FSGD/BDHC3Study.fsgd\
INFO: demeaning continuous variables\
Continuous Variable Means (all subjects)\
0 age 24.1115 7.32707\
1 edu 15.4131 3.21673\
2 medicationload 0.75082 1.46775\
3 tiv 1.52969e+06 162728\
Class Size and Means of each Continuous Variable\
1 BD 150 22.6667 13.8733 1.5267 1534142.9100 \
2 HC 155 25.5097 16.9032 0.0000 1525383.7726 \
INFO: gd2mtx_method is dods\
Reading source surface
/Volumes/structrual/subject_struct/struct/fsaverage/surf/lh.white\
Number of vertices 163842\
Number of faces 327680\
Total area 65416.984375\
AvgVtxArea 0.399269\
AvgVtxDist 0.721953\
StdVtxDist 0.195470\
\
7.2.0\
cwd /Volumes/structrual/subject_struct/struct\
cmdline mri_glmfit --y lh.volume.BDHC3Study.10.mgh --fsgd FSGD/BDHC3Study.fsgd
--C Contrasts/HC3-BD3.mtx --C Contrasts/BD3-HC3.mtx --surf fsaverage lh
--cortex --glmdir lh.volume.BDHC3Study.10.glmdir \
sysname Darwin\
hostname 192.168.1.2\
machine x86_64\
user caoyuan\
FixVertexAreaFlag = 1\
UseMaskWithSmoothing 1\
OneSampleGroupMean 0\
y /Volumes/structrual/subject_struct/struct/lh.volume.BDHC3Study.10.mgh\
logyflag 0\
usedti 0\
FSGD FSGD/BDHC3Study.fsgd\
labelmask
/Volumes/structrual/subject_struct/struct/fsaverage/label/lh.cortex.label\
maskinv 0\
glmdir lh.volume.BDHC3Study.10.glmdir\
IllCondOK 0\
ReScaleX 1\
DoFFx 0\
Creating output directory lh.volume.BDHC3Study.10.glmdir\
Loading y from
/Volumes/structrual/subject_struct/struct/lh.volume.BDHC3Study.10.mgh\
... done reading.\
INFO: gd2mtx_method is dods\
Saving design matrix to lh.volume.BDHC3Study.10.glmdir/Xg.dat\
Computing normalized matrix\
Normalized matrix condition is 1e+08\
Design matrix ------------------\
1.00000 0.00000 -0.28817 0.00000 0.18245 0.00000 0.16977 0.00000
-0.24993 0.00000;\
1.00000 0.00000 -0.42465 0.00000 0.18245 0.00000 0.85108 0.00000
-0.28781 0.00000;\
1.00000 0.00000 -0.69762 0.00000 0.18245 0.00000 -0.51154 0.00000
0.15378 0.00000;\
1.00000 0.00000 -1.24354 0.00000 -1.68280 0.00000 -0.51154 0.00000
-0.73881 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.06105 0.00000 1.53240 0.00000
0.72956 0.00000;\
1.00000 0.00000 0.66719 0.00000 0.18245 0.00000 -0.51154 0.00000
-2.78624 0.00000;\
1.00000 0.00000 -0.01521 0.00000 0.49332 0.00000 -0.51154 0.00000
-0.02288 0.00000;\
1.00000 0.00000 -0.69762 0.00000 -0.75018 0.00000 1.53240 0.00000
-1.87276 0.00000;\
1.00000 0.00000 -0.28817 0.00000 0.18245 0.00000 1.53240 0.00000
0.53938 0.00000;\
1.00000 0.00000 -0.01521 0.00000 0.80420 0.00000 -0.51154 0.00000
0.40773 0.00000;\
1.00000 0.00000 -0.42465 0.00000 -1.06105 0.00000 -0.51154 0.00000
0.34940 0.00000;\
1.00000 0.00000 -1.10706 0.00000 -1.37192 0.00000 -0.51154 0.00000
-0.91835 0.00000;\
1.00000 0.00000 -0.69762 0.00000 -2.30455 0.00000 -0.51154 0.00000
-0.13529 0.00000;\
1.00000 0.00000 -0.28817 0.00000 -0.43930 0.00000 -0.51154 0.00000
-1.61411 0.00000;\
1.00000 0.00000 1.62255 0.00000 0.18245 0.00000 2.21371 0.00000
0.38974 0.00000;\
1.00000 0.00000 -0.42465 0.00000 1.73682 0.00000 -0.51154 0.00000
1.54482 0.00000;\
1.00000 0.00000 -0.42465 0.00000 -0.12843 0.00000 0.85108 0.00000
-0.74847 0.00000;\
1.00000 0.00000 0.12127 0.00000 0.18245 0.00000 0.16977 0.00000
1.27003 0.00000;\
1.00000 0.00000 -0.56114 0.00000 -0.43930 0.00000 0.85108 0.00000
-1.30883 0.00000;\
1.00000 0.00000 -0.42465 0.00000 -0.43930 0.00000 0.85108 0.00000
0.43048 0.00000;\
1.00000 0.00000 -1.24354 0.00000 -1.68280 0.00000 1.53240 0.00000
0.78768 0.00000;\
1.00000 0.00000 0.39423 0.00000 -0.12843 0.00000 -0.51154 0.00000
0.64267 0.00000;\
1.00000 0.00000 -0.42465 0.00000 -0.43930 0.00000 1.53240 0.00000
1.26929 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.68280 0.00000 -0.51154 0.00000
1.16324 0.00000;\
1.00000 0.00000 0.12127 0.00000 0.18245 0.00000 2.21371 0.00000
-1.77612 0.00000;\
1.00000 0.00000 0.53071 0.00000 -0.43930 0.00000 0.85108 0.00000
0.78444 0.00000;\
1.00000 0.00000 -0.28817 0.00000 0.49332 0.00000 0.85108 0.00000
0.66974 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.37192 0.00000 1.53240 0.00000
-0.26772 0.00000;\
1.00000 0.00000 -0.42465 0.00000 0.18245 0.00000 1.53240 0.00000
-1.34399 0.00000;\
1.00000 0.00000 -0.56114 0.00000 -0.43930 0.00000 0.85108 0.00000
-0.43384 0.00000;\
1.00000 0.00000 -0.56114 0.00000 -0.75018 0.00000 2.21371 0.00000
-0.15847 0.00000;\
1.00000 0.00000 -1.24354 0.00000 -1.99367 0.00000 1.53240 0.00000
0.61731 0.00000;\
1.00000 0.00000 -0.69762 0.00000 -0.43930 0.00000 0.85108 0.00000
1.65662 0.00000;\
1.00000 0.00000 -1.10706 0.00000 -1.06105 0.00000 -0.51154 0.00000
-0.49311 0.00000;\
1.00000 0.00000 0.25775 0.00000 -0.12843 0.00000 0.16977 0.00000
0.83194 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.37192 0.00000 0.85108 0.00000
-2.77704 0.00000;\
1.00000 0.00000 -0.56114 0.00000 0.18245 0.00000 2.21371 0.00000
2.27539 0.00000;\
1.00000 0.00000 0.39423 0.00000 0.18245 0.00000 2.21371 0.00000
0.27499 0.00000;\
1.00000 0.00000 -0.42465 0.00000 0.18245 0.00000 -0.51154 0.00000
0.68630 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -2.30455 0.00000 -0.51154 0.00000
1.10154 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.68280 0.00000 0.85108 0.00000
-0.54007 0.00000;\
1.00000 0.00000 1.89551 0.00000 -0.12843 0.00000 2.89502 0.00000
1.26653 0.00000;\
1.00000 0.00000 -0.28817 0.00000 -0.12843 0.00000 0.16977 0.00000
-0.79735 0.00000;\
1.00000 0.00000 -0.69762 0.00000 -0.43930 0.00000 -0.51154 0.00000
0.16217 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.37192 0.00000 -0.51154 0.00000
-1.02069 0.00000;\
1.00000 0.00000 -1.10706 0.00000 -1.37192 0.00000 -0.51154 0.00000
0.23234 0.00000;\
1.00000 0.00000 -0.42465 0.00000 -0.12843 0.00000 -0.51154 0.00000
-0.10220 0.00000;\
1.00000 0.00000 -0.56114 0.00000 -0.12843 0.00000 -0.51154 0.00000
2.38876 0.00000;\
1.00000 0.00000 -0.42465 0.00000 -0.43930 0.00000 2.21371 0.00000
-2.18700 0.00000;\
1.00000 0.00000 1.48607 0.00000 -1.06105 0.00000 -0.51154 0.00000
0.13799 0.00000;\
1.00000 0.00000 -0.56114 0.00000 0.18245 0.00000 -0.51154 0.00000
1.48800 0.00000;\
1.00000 0.00000 3.66975 0.00000 0.18245 0.00000 2.89502 0.00000
-0.51610 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.06105 0.00000 -0.51154 0.00000
-1.01969 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.06105 0.00000 -0.51154 0.00000
-0.89824 0.00000;\
1.00000 0.00000 3.39679 0.00000 0.18245 0.00000 -0.51154 0.00000
-0.99082 0.00000;\
1.00000 0.00000 -0.69762 0.00000 0.18245 0.00000 -0.51154 0.00000
-0.26299 0.00000;\
1.00000 0.00000 -0.69762 0.00000 0.18245 0.00000 -0.51154 0.00000
-0.84961 0.00000;\
1.00000 0.00000 3.12383 0.00000 -1.06105 0.00000 2.21371 0.00000
1.91621 0.00000;\
1.00000 0.00000 0.80367 0.00000 0.18245 0.00000 -0.51154 0.00000
1.29735 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.06105 0.00000 0.85108 0.00000
2.15805 0.00000;\
1.00000 0.00000 0.12127 0.00000 0.18245 0.00000 -0.51154 0.00000
0.49463 0.00000;\
1.00000 0.00000 -0.69762 0.00000 -0.75018 0.00000 -0.51154 0.00000
0.00510 0.00000;\
1.00000 0.00000 -0.15169 0.00000 0.18245 0.00000 -0.51154 0.00000
1.33011 0.00000;\
1.00000 0.00000 0.94015 0.00000 0.18245 0.00000 -0.51154 0.00000
-1.17378 0.00000;\
1.00000 0.00000 0.53071 0.00000 -1.06105 0.00000 0.85108 0.00000
0.42514 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -0.12843 0.00000 -0.51154 0.00000
0.51325 0.00000;\
1.00000 0.00000 -0.97058 0.00000 -1.37192 0.00000 0.85108 0.00000
0.12466 0.00000;\
1.00000 0.00000 -0.56114 0.00000 -0.75018 0.00000 0.85108 0.00000
0.54726 0.00000;\
1.00000 0.00000 -1.10706 0.00000 -1.68280 0.00000 2.89502 0.00000
-1.49546 0.00000;\
1.00000 0.00000 -0.56114 0.00000 -0.75018 0.00000 -0.51154 0.00000
0.95444 0.00000;\
1.00000 0.00000 -0.28817 0.00000 -0.12843 0.00000 1.53240 0.00000
0.26920 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.37192 0.00000 1.53240 0.00000
-0.70495 0.00000;\
1.00000 0.00000 -0.28817 0.00000 -0.12843 0.00000 2.89502 0.00000
-0.74090 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.06105 0.00000 -0.51154 0.00000
1.38419 0.00000;\
1.00000 0.00000 -1.10706 0.00000 -1.37192 0.00000 0.85108 0.00000
-0.25521 0.00000;\
1.00000 0.00000 0.66719 0.00000 0.18245 0.00000 -0.51154 0.00000
-0.96211 0.00000;\
1.00000 0.00000 0.53071 0.00000 0.18245 0.00000 0.85108 0.00000
0.06984 0.00000;\
1.00000 0.00000 -0.01521 0.00000 0.18245 0.00000 -0.51154 0.00000
-0.65039 0.00000;\
1.00000 0.00000 -0.42465 0.00000 -0.43930 0.00000 1.53240 0.00000
1.17289 0.00000;\
1.00000 0.00000 1.75903 0.00000 -0.12843 0.00000 -0.51154 0.00000
-1.06727 0.00000;\
1.00000 0.00000 -1.10706 0.00000 -1.37192 0.00000 0.85108 0.00000
0.31477 0.00000;\
1.00000 0.00000 -0.56114 0.00000 -1.06105 0.00000 0.16977 0.00000
0.15572 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.06105 0.00000 -0.51154 0.00000
-1.12795 0.00000;\
1.00000 0.00000 -0.15169 0.00000 -0.12843 0.00000 1.53240 0.00000
-0.44525 0.00000;\
1.00000 0.00000 0.12127 0.00000 -1.06105 0.00000 2.21371 0.00000
-1.21080 0.00000;\
1.00000 0.00000 -0.01521 0.00000 0.18245 0.00000 -0.51154 0.00000
0.38365 0.00000;\
1.00000 0.00000 0.80367 0.00000 0.18245 0.00000 -0.51154 0.00000
-1.59257 0.00000;\
1.00000 0.00000 -0.42465 0.00000 -0.12843 0.00000 0.16977 0.00000
0.28286 0.00000;\
1.00000 0.00000 2.03199 0.00000 0.18245 0.00000 1.53240 0.00000
-0.37920 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.06105 0.00000 2.21371 0.00000
1.83885 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.06105 0.00000 2.89502 0.00000
-0.17407 0.00000;\
1.00000 0.00000 1.07663 0.00000 1.11507 0.00000 0.85108 0.00000
-0.75448 0.00000;\
1.00000 0.00000 1.34959 0.00000 0.18245 0.00000 -0.51154 0.00000
-0.27964 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -0.75018 0.00000 -0.51154 0.00000
1.54214 0.00000;\
1.00000 0.00000 0.12127 0.00000 -0.12843 0.00000 2.21371 0.00000
-0.79597 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.06105 0.00000 -0.51154 0.00000
1.79311 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.06105 0.00000 4.25765 0.00000
-0.45080 0.00000;\
1.00000 0.00000 -0.42465 0.00000 0.49332 0.00000 0.85108 0.00000
-0.01150 0.00000;\
1.00000 0.00000 -0.69762 0.00000 -0.75018 0.00000 -0.51154 0.00000
0.64405 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.06105 0.00000 -0.51154 0.00000
-0.70261 0.00000;\
1.00000 0.00000 0.94015 0.00000 -0.12843 0.00000 -0.51154 0.00000
-1.30850 0.00000;\
1.00000 0.00000 -0.97058 0.00000 -1.37192 0.00000 2.89502 0.00000
-0.46053 0.00000;\
1.00000 0.00000 -0.56114 0.00000 -0.12843 0.00000 -0.51154 0.00000
-2.83786 0.00000;\
1.00000 0.00000 -0.42465 0.00000 -0.12843 0.00000 3.57633 0.00000
0.76505 0.00000;\
1.00000 0.00000 0.39423 0.00000 0.18245 0.00000 -0.51154 0.00000
-0.08056 0.00000;\
1.00000 0.00000 -1.51650 0.00000 0.80420 0.00000 -0.51154 0.00000
-0.72595 0.00000;\
1.00000 0.00000 3.53327 0.00000 -1.68280 0.00000 -0.51154 0.00000
0.19484 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.37192 0.00000 -0.51154 0.00000
0.03331 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.37192 0.00000 -0.51154 0.00000
-0.31852 0.00000;\
1.00000 0.00000 -0.97058 0.00000 -1.37192 0.00000 -0.51154 0.00000
-0.13015 0.00000;\
1.00000 0.00000 -0.01521 0.00000 0.18245 0.00000 -0.51154 0.00000
-0.61283 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.37192 0.00000 -0.51154 0.00000
-0.91310 0.00000;\
1.00000 0.00000 1.07663 0.00000 0.18245 0.00000 -0.51154 0.00000
0.51631 0.00000;\
1.00000 0.00000 3.66975 0.00000 -0.43930 0.00000 2.21371 0.00000
0.19484 0.00000;\
1.00000 0.00000 -1.10706 0.00000 -1.37192 0.00000 -0.51154 0.00000
-0.41670 0.00000;\
1.00000 0.00000 0.66719 0.00000 0.18245 0.00000 1.53240 0.00000
0.90845 0.00000;\
1.00000 0.00000 -0.15169 0.00000 0.18245 0.00000 -0.51154 0.00000
-1.84988 0.00000;\
1.00000 0.00000 1.89551 0.00000 0.18245 0.00000 2.21371 0.00000
1.74033 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.06105 0.00000 0.85108 0.00000
0.36628 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.06105 0.00000 -0.51154 0.00000
3.04103 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.37192 0.00000 -0.51154 0.00000
-0.46474 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.06105 0.00000 1.53240 0.00000
-0.20281 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.06105 0.00000 -0.51154 0.00000
1.48859 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.06105 0.00000 0.85108 0.00000
0.61445 0.00000;\
1.00000 0.00000 -0.28817 0.00000 -0.75018 0.00000 -0.51154 0.00000
2.22196 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.06105 0.00000 -0.51154 0.00000
0.16742 0.00000;\
1.00000 0.00000 -0.56114 0.00000 -0.43930 0.00000 2.21371 0.00000
-1.74728 0.00000;\
1.00000 0.00000 -0.15169 0.00000 -0.12843 0.00000 2.89502 0.00000
-0.12623 0.00000;\
1.00000 0.00000 -0.69762 0.00000 -0.75018 0.00000 -0.51154 0.00000
0.57873 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.06105 0.00000 2.89502 0.00000
1.09474 0.00000;\
1.00000 0.00000 -0.83410 0.00000 -1.06105 0.00000 2.89502 0.00000
-1.04270 0.00000;\
1.00000 0.00000 -0.69762 0.00000 -0.75018 0.00000 -0.51154 0.00000
0.79456 0.00000;\
1.00000 0.00000 -0.42465 0.00000 0.18245 0.00000 2.21371 0.00000
0.63590 0.00000;\
1.00000 0.00000 -0.15169 0.00000 0.18245 0.00000 0.85108 0.00000
1.21845 0.00000;\
1.00000 0.00000 -0.69762 0.00000 -0.75018 0.00000 1.53240 0.00000
0.02860 0.00000;\
1.00000 0.00000 -0.01521 0.00000 0.18245 0.00000 0.16977 0.00000
1.80505 0.00000;\
1.00000 0.00000 -0.01521 0.00000 -0.12843 0.00000 -0.51154 0.00000
-0.22439 0.00000;\
1.00000 0.00000 -0.97058 0.00000 -0.43930 0.00000 2.21371 0.00000
-0.38435 0.00000;\
1.00000 0.00000 1.75903 0.00000 0.18245 0.00000 -0.51154 0.00000
-0.25098 0.00000;\
1.00000 0.00000 -0.69762 0.00000 -1.06105 0.00000 -0.51154 0.00000
0.37780 0.00000;\
1.00000 0.00000 -0.97058 0.00000 -0.75018 0.00000 -0.51154 0.00000
-1.14023 0.00000;\
1.00000 0.00000 -0.69762 0.00000 -0.75018 0.00000 -0.51154 0.00000
-0.54209 0.00000;\
1.00000 0.00000 0.25775 0.00000 0.49332 0.00000 -0.51154 0.00000
-0.71615 0.00000;\
1.00000 0.00000 -0.28817 0.00000 -0.43930 0.00000 2.21371 0.00000
-0.32792 0.00000;\
1.00000 0.00000 -0.28817 0.00000 -0.12843 0.00000 -0.51154 0.00000
-0.74035 0.00000;\
1.00000 0.00000 -0.97058 0.00000 -1.37192 0.00000 -0.51154 0.00000
1.32966 0.00000;\
1.00000 0.00000 -0.56114 0.00000 -1.06105 0.00000 -0.51154 0.00000
-0.73888 0.00000;\
1.00000 0.00000 1.07663 0.00000 0.18245 0.00000 2.21371 0.00000
-0.96276 0.00000;\
1.00000 0.00000 -0.56114 0.00000 -0.43930 0.00000 0.85108 0.00000
1.62583 0.00000;\
1.00000 0.00000 -0.69762 0.00000 3.29119 0.00000 0.85108 0.00000
-0.14843 0.00000;\
0.00000 1.00000 0.00000 -0.01521 0.00000 0.80420 0.00000 -0.51154
0.00000 -0.58938;\
0.00000 1.00000 0.00000 -0.15169 0.00000 0.80420 0.00000 -0.51154
0.00000 0.46785;\
0.00000 1.00000 0.00000 -0.01521 0.00000 1.11507 0.00000 -0.51154
0.00000 -1.40662;\
0.00000 1.00000 0.00000 0.12127 0.00000 0.80420 0.00000 -0.51154
0.00000 -1.56635;\
0.00000 1.00000 0.00000 0.12127 0.00000 1.11507 0.00000 -0.51154
0.00000 -0.45306;\
0.00000 1.00000 0.00000 0.12127 0.00000 1.42595 0.00000 -0.51154
0.00000 3.17909;\
0.00000 1.00000 0.00000 0.12127 0.00000 1.11507 0.00000 -0.51154
0.00000 0.90245;\
0.00000 1.00000 0.00000 -0.01521 0.00000 1.42595 0.00000 -0.51154
0.00000 0.18352;\
0.00000 1.00000 0.00000 0.12127 0.00000 1.11507 0.00000 -0.51154
0.00000 -0.22774;\
0.00000 1.00000 0.00000 -0.15169 0.00000 1.11507 0.00000 -0.51154
0.00000 0.19322;\
0.00000 1.00000 0.00000 0.25775 0.00000 1.42595 0.00000 -0.51154
0.00000 1.03482;\
0.00000 1.00000 0.00000 -0.01521 0.00000 0.80420 0.00000 -0.51154
0.00000 1.71769;\
0.00000 1.00000 0.00000 0.25775 0.00000 1.11507 0.00000 -0.51154
0.00000 0.21198;\
0.00000 1.00000 0.00000 0.12127 0.00000 0.80420 0.00000 -0.51154
0.00000 1.87062;\
0.00000 1.00000 0.00000 0.25775 0.00000 1.42595 0.00000 -0.51154
0.00000 0.73176;\
0.00000 1.00000 0.00000 0.12127 0.00000 0.49332 0.00000 -0.51154
0.00000 -1.09532;\
0.00000 1.00000 0.00000 0.12127 0.00000 1.11507 0.00000 -0.51154
0.00000 -0.55379;\
0.00000 1.00000 0.00000 0.12127 0.00000 1.11507 0.00000 -0.51154
0.00000 0.01805;\
0.00000 1.00000 0.00000 0.80367 0.00000 1.42595 0.00000 -0.51154
0.00000 -0.80841;\
0.00000 1.00000 0.00000 -0.01521 0.00000 0.80420 0.00000 -0.51154
0.00000 0.88695;\
0.00000 1.00000 0.00000 0.25775 0.00000 1.42595 0.00000 -0.51154
0.00000 0.96163;\
0.00000 1.00000 0.00000 -0.01521 0.00000 0.49332 0.00000 -0.51154
0.00000 1.12992;\
0.00000 1.00000 0.00000 0.39423 0.00000 1.11507 0.00000 -0.51154
0.00000 -0.87929;\
0.00000 1.00000 0.00000 -0.15169 0.00000 0.49332 0.00000 -0.51154
0.00000 0.09907;\
0.00000 1.00000 0.00000 -0.15169 0.00000 0.49332 0.00000 -0.51154
0.00000 1.88381;\
0.00000 1.00000 0.00000 0.12127 0.00000 1.11507 0.00000 -0.51154
0.00000 -0.92494;\
0.00000 1.00000 0.00000 0.12127 0.00000 0.80420 0.00000 -0.51154
0.00000 -0.52704;\
0.00000 1.00000 0.00000 2.44143 0.00000 -1.06105 0.00000 -0.51154
0.00000 0.55235;\
0.00000 1.00000 0.00000 0.12127 0.00000 0.18245 0.00000 -0.51154
0.00000 -0.26689;\
0.00000 1.00000 0.00000 3.53327 0.00000 -0.12843 0.00000 -0.51154
0.00000 -1.47792;\
0.00000 1.00000 0.00000 3.53327 0.00000 -1.06105 0.00000 -0.51154
0.00000 -0.49470;\
0.00000 1.00000 0.00000 0.12127 0.00000 1.42595 0.00000 -0.51154
0.00000 0.00286;\
0.00000 1.00000 0.00000 0.12127 0.00000 1.42595 0.00000 -0.51154
0.00000 0.51757;\
0.00000 1.00000 0.00000 0.12127 0.00000 0.49332 0.00000 -0.51154
0.00000 -0.25352;\
0.00000 1.00000 0.00000 0.80367 0.00000 1.73682 0.00000 -0.51154
0.00000 -1.42284;\
0.00000 1.00000 0.00000 0.39423 0.00000 1.42595 0.00000 -0.51154
0.00000 -0.36628;\
0.00000 1.00000 0.00000 0.80367 0.00000 0.18245 0.00000 -0.51154
0.00000 0.55309;\
0.00000 1.00000 0.00000 1.07663 0.00000 1.73682 0.00000 -0.51154
0.00000 -0.46591;\
0.00000 1.00000 0.00000 -0.97058 0.00000 -1.06105 0.00000 -0.51154
0.00000 0.49620;\
0.00000 1.00000 0.00000 0.53071 0.00000 1.42595 0.00000 -0.51154
0.00000 -1.08142;\
0.00000 1.00000 0.00000 0.94015 0.00000 1.73682 0.00000 -0.51154
0.00000 -0.71260;\
0.00000 1.00000 0.00000 2.85087 0.00000 0.18245 0.00000 -0.51154
0.00000 -0.59736;\
0.00000 1.00000 0.00000 3.53327 0.00000 -1.06105 0.00000 -0.51154
0.00000 1.51640;\
0.00000 1.00000 0.00000 3.53327 0.00000 -1.06105 0.00000 -0.51154
0.00000 -0.89842;\
0.00000 1.00000 0.00000 3.26031 0.00000 0.18245 0.00000 -0.51154
0.00000 0.40622;\
0.00000 1.00000 0.00000 0.53071 0.00000 1.73682 0.00000 -0.51154
0.00000 -0.61177;\
0.00000 1.00000 0.00000 -0.15169 0.00000 0.49332 0.00000 -0.51154
0.00000 -0.00248;\
0.00000 1.00000 0.00000 4.21567 0.00000 -0.12843 0.00000 -0.51154
0.00000 0.40752;\
0.00000 1.00000 0.00000 -0.28817 0.00000 0.49332 0.00000 -0.51154
0.00000 1.38899;\
0.00000 1.00000 0.00000 0.12127 0.00000 1.11507 0.00000 -0.51154
0.00000 0.17786;\
0.00000 1.00000 0.00000 -0.01521 0.00000 0.80420 0.00000 -0.51154
0.00000 -1.58565;\
0.00000 1.00000 0.00000 -0.01521 0.00000 0.49332 0.00000 -0.51154
0.00000 -0.26043;\
0.00000 1.00000 0.00000 -0.01521 0.00000 -0.75018 0.00000 -0.51154
0.00000 0.06709;\
0.00000 1.00000 0.00000 -0.28817 0.00000 0.18245 0.00000 -0.51154
0.00000 -0.66806;\
0.00000 1.00000 0.00000 -0.15169 0.00000 0.49332 0.00000 -0.51154
0.00000 0.03236;\
0.00000 1.00000 0.00000 -0.01521 0.00000 0.49332 0.00000 -0.51154
0.00000 -0.97739;\
0.00000 1.00000 0.00000 -0.01521 0.00000 0.49332 0.00000 -0.51154
0.00000 0.01225;\
0.00000 1.00000 0.00000 -0.01521 0.00000 1.11507 0.00000 -0.51154
0.00000 -1.12112;\
0.00000 1.00000 0.00000 0.12127 0.00000 0.49332 0.00000 -0.51154
0.00000 0.76301;\
0.00000 1.00000 0.00000 0.25775 0.00000 1.42595 0.00000 -0.51154
0.00000 -0.30441;\
0.00000 1.00000 0.00000 1.34959 0.00000 2.35857 0.00000 -0.51154
0.00000 1.94037;\
0.00000 1.00000 0.00000 -0.15169 0.00000 0.80420 0.00000 -0.51154
0.00000 1.02621;\
0.00000 1.00000 0.00000 -0.01521 0.00000 0.80420 0.00000 -0.51154
0.00000 0.87115;\
0.00000 1.00000 0.00000 -0.01521 0.00000 0.80420 0.00000 -0.51154
0.00000 -0.63824;\
0.00000 1.00000 0.00000 -0.01521 0.00000 0.80420 0.00000 -0.51154
0.00000 -0.40320;\
0.00000 1.00000 0.00000 -0.15169 0.00000 0.80420 0.00000 -0.51154
0.00000 -0.68365;\
0.00000 1.00000 0.00000 -0.01521 0.00000 0.49332 0.00000 -0.51154
0.00000 0.71163;\
0.00000 1.00000 0.00000 0.66719 0.00000 0.49332 0.00000 -0.51154
0.00000 -0.58467;\
0.00000 1.00000 0.00000 -0.15169 0.00000 0.80420 0.00000 -0.51154
0.00000 0.09247;\
0.00000 1.00000 0.00000 0.12127 0.00000 1.11507 0.00000 -0.51154
0.00000 -0.76886;\
0.00000 1.00000 0.00000 0.12127 0.00000 0.18245 0.00000 -0.51154
0.00000 0.90693;\
0.00000 1.00000 0.00000 -0.01521 0.00000 0.49332 0.00000 -0.51154
0.00000 -0.37908;\
0.00000 1.00000 0.00000 -0.15169 0.00000 0.18245 0.00000 -0.51154
0.00000 1.91060;\
0.00000 1.00000 0.00000 0.12127 0.00000 0.18245 0.00000 -0.51154
0.00000 0.30296;\
0.00000 1.00000 0.00000 -0.01521 0.00000 0.80420 0.00000 -0.51154
0.00000 -0.02546;\
0.00000 1.00000 0.00000 0.12127 0.00000 -0.12843 0.00000 -0.51154
0.00000 1.02245;\
0.00000 1.00000 0.00000 0.12127 0.00000 0.49332 0.00000 -0.51154
0.00000 0.06459;\
0.00000 1.00000 0.00000 0.53071 0.00000 -1.06105 0.00000 -0.51154
0.00000 0.13695;\
0.00000 1.00000 0.00000 0.12127 0.00000 0.80420 0.00000 -0.51154
0.00000 -1.22839;\
0.00000 1.00000 0.00000 0.80367 0.00000 0.80420 0.00000 -0.51154
0.00000 3.54026;\
0.00000 1.00000 0.00000 0.25775 0.00000 0.49332 0.00000 -0.51154
0.00000 0.59192;\
0.00000 1.00000 0.00000 0.39423 0.00000 0.49332 0.00000 -0.51154
0.00000 -1.09535;\
0.00000 1.00000 0.00000 -0.28817 0.00000 0.49332 0.00000 -0.51154
0.00000 -1.19351;\
0.00000 1.00000 0.00000 0.53071 0.00000 0.80420 0.00000 -0.51154
0.00000 1.52251;\
0.00000 1.00000 0.00000 -0.01521 0.00000 0.49332 0.00000 -0.51154
0.00000 0.58323;\
0.00000 1.00000 0.00000 0.12127 0.00000 0.80420 0.00000 -0.51154
0.00000 -0.48244;\
0.00000 1.00000 0.00000 0.25775 0.00000 1.11507 0.00000 -0.51154
0.00000 -0.35223;\
0.00000 1.00000 0.00000 -0.28817 0.00000 0.18245 0.00000 -0.51154
0.00000 0.60099;\
0.00000 1.00000 0.00000 0.12127 0.00000 1.42595 0.00000 -0.51154
0.00000 -0.62432;\
0.00000 1.00000 0.00000 0.12127 0.00000 1.11507 0.00000 -0.51154
0.00000 -0.42717;\
0.00000 1.00000 0.00000 -0.42465 0.00000 0.18245 0.00000 -0.51154
0.00000 0.66125;\
0.00000 1.00000 0.00000 -0.15169 0.00000 0.49332 0.00000 -0.51154
0.00000 0.47803;\
0.00000 1.00000 0.00000 -0.15169 0.00000 0.49332 0.00000 -0.51154
0.00000 -0.16888;\
0.00000 1.00000 0.00000 0.25775 0.00000 1.11507 0.00000 -0.51154
0.00000 -0.34995;\
0.00000 1.00000 0.00000 0.12127 0.00000 1.11507 0.00000 -0.51154
0.00000 0.57400;\
0.00000 1.00000 0.00000 -0.15169 0.00000 0.49332 0.00000 -0.51154
0.00000 -0.19242;\
0.00000 1.00000 0.00000 -0.28817 0.00000 0.49332 0.00000 -0.51154
0.00000 -0.06581;\
0.00000 1.00000 0.00000 -0.28817 0.00000 0.18245 0.00000 -0.51154
0.00000 -0.03799;\
0.00000 1.00000 0.00000 0.66719 0.00000 0.18245 0.00000 -0.51154
0.00000 0.03670;\
0.00000 1.00000 0.00000 -0.28817 0.00000 0.49332 0.00000 -0.51154
0.00000 0.05197;\
0.00000 1.00000 0.00000 0.25775 0.00000 0.49332 0.00000 -0.51154
0.00000 -0.84755;\
0.00000 1.00000 0.00000 0.94015 0.00000 1.11507 0.00000 -0.51154
0.00000 -1.20095;\
0.00000 1.00000 0.00000 -1.10706 0.00000 -0.12843 0.00000 -0.51154
0.00000 -0.69471;\
0.00000 1.00000 0.00000 -1.10706 0.00000 -1.37192 0.00000 -0.51154
0.00000 -0.55174;\
0.00000 1.00000 0.00000 -1.10706 0.00000 -1.37192 0.00000 -0.51154
0.00000 -0.66911;\
0.00000 1.00000 0.00000 -1.10706 0.00000 -1.37192 0.00000 -0.51154
0.00000 -0.23994;\
0.00000 1.00000 0.00000 -1.10706 0.00000 -1.37192 0.00000 -0.51154
0.00000 -0.89749;\
0.00000 1.00000 0.00000 -1.10706 0.00000 -1.37192 0.00000 -0.51154
0.00000 -0.36802;\
0.00000 1.00000 0.00000 -1.10706 0.00000 -1.37192 0.00000 -0.51154
0.00000 -1.35377;\
0.00000 1.00000 0.00000 -1.10706 0.00000 -1.37192 0.00000 -0.51154
0.00000 -0.71623;\
0.00000 1.00000 0.00000 -1.10706 0.00000 -1.37192 0.00000 -0.51154
0.00000 -1.01970;\
0.00000 1.00000 0.00000 4.21567 0.00000 -3.23717 0.00000 -0.51154
0.00000 -0.72547;\
0.00000 1.00000 0.00000 0.94015 0.00000 1.42595 0.00000 -0.51154
0.00000 1.74132;\
0.00000 1.00000 0.00000 0.66719 0.00000 1.11507 0.00000 -0.51154
0.00000 -0.44515;\
0.00000 1.00000 0.00000 -1.10706 0.00000 -1.37192 0.00000 -0.51154
0.00000 -0.25315;\
0.00000 1.00000 0.00000 -1.10706 0.00000 -1.37192 0.00000 -0.51154
0.00000 -0.82790;\
0.00000 1.00000 0.00000 -1.10706 0.00000 -1.37192 0.00000 -0.51154
0.00000 -0.33206;\
0.00000 1.00000 0.00000 -1.10706 0.00000 -1.37192 0.00000 -0.51154
0.00000 -1.34843;\
0.00000 1.00000 0.00000 -0.97058 0.00000 -1.37192 0.00000 -0.51154
0.00000 -1.34904;\
0.00000 1.00000 0.00000 -1.10706 0.00000 -1.37192 0.00000 -0.51154
0.00000 0.19625;\
0.00000 1.00000 0.00000 -1.10706 0.00000 -1.37192 0.00000 -0.51154
0.00000 -1.73942;\
0.00000 1.00000 0.00000 -1.10706 0.00000 -1.37192 0.00000 -0.51154
0.00000 -0.54710;\
0.00000 1.00000 0.00000 -0.97058 0.00000 -1.37192 0.00000 -0.51154
0.00000 0.98305;\
0.00000 1.00000 0.00000 -0.97058 0.00000 -1.37192 0.00000 -0.51154
0.00000 0.87506;\
0.00000 1.00000 0.00000 -0.97058 0.00000 -1.37192 0.00000 -0.51154
0.00000 -0.65192;\
0.00000 1.00000 0.00000 -1.10706 0.00000 -1.37192 0.00000 -0.51154
0.00000 -0.18432;\
0.00000 1.00000 0.00000 0.25775 0.00000 1.42595 0.00000 -0.51154
0.00000 -0.56212;\
0.00000 1.00000 0.00000 0.25775 0.00000 1.42595 0.00000 -0.51154
0.00000 0.17718;\
0.00000 1.00000 0.00000 0.25775 0.00000 1.42595 0.00000 -0.51154
0.00000 1.09793;\
0.00000 1.00000 0.00000 0.12127 0.00000 1.11507 0.00000 -0.51154
0.00000 0.66695;\
0.00000 1.00000 0.00000 0.12127 0.00000 0.49332 0.00000 -0.51154
0.00000 0.75582;\
0.00000 1.00000 0.00000 -0.01521 0.00000 0.80420 0.00000 -0.51154
0.00000 -0.13944;\
0.00000 1.00000 0.00000 0.39423 0.00000 1.42595 0.00000 -0.51154
0.00000 -0.16458;\
0.00000 1.00000 0.00000 0.25775 0.00000 1.11507 0.00000 -0.51154
0.00000 1.70001;\
0.00000 1.00000 0.00000 -0.01521 0.00000 0.80420 0.00000 -0.51154
0.00000 -0.42561;\
0.00000 1.00000 0.00000 -0.01521 0.00000 0.80420 0.00000 -0.51154
0.00000 -0.69845;\
0.00000 1.00000 0.00000 0.39423 0.00000 1.42595 0.00000 -0.51154
0.00000 -0.28155;\
0.00000 1.00000 0.00000 0.25775 0.00000 2.04769 0.00000 -0.51154
0.00000 0.39792;\
0.00000 1.00000 0.00000 0.39423 0.00000 1.42595 0.00000 -0.51154
0.00000 0.07091;\
0.00000 1.00000 0.00000 0.66719 0.00000 1.42595 0.00000 -0.51154
0.00000 1.19614;\
0.00000 1.00000 0.00000 0.12127 0.00000 1.11507 0.00000 -0.51154
0.00000 -2.62177;\
0.00000 1.00000 0.00000 0.39423 0.00000 1.42595 0.00000 -0.51154
0.00000 -0.24814;\
0.00000 1.00000 0.00000 0.39423 0.00000 1.42595 0.00000 -0.51154
0.00000 1.27980;\
0.00000 1.00000 0.00000 0.39423 0.00000 0.80420 0.00000 -0.51154
0.00000 -0.27802;\
0.00000 1.00000 0.00000 0.53071 0.00000 1.42595 0.00000 -0.51154
0.00000 -0.37874;\
0.00000 1.00000 0.00000 0.39423 0.00000 1.42595 0.00000 -0.51154
0.00000 0.60943;\
0.00000 1.00000 0.00000 0.12127 0.00000 0.18245 0.00000 -0.51154
0.00000 0.21685;\
0.00000 1.00000 0.00000 0.12127 0.00000 0.49332 0.00000 -0.51154
0.00000 -0.15463;\
0.00000 1.00000 0.00000 0.39423 0.00000 0.49332 0.00000 -0.51154
0.00000 -0.07122;\
0.00000 1.00000 0.00000 0.25775 0.00000 1.42595 0.00000 -0.51154
0.00000 0.41914;\
0.00000 1.00000 0.00000 0.39423 0.00000 1.11507 0.00000 -0.51154
0.00000 -0.02571;\
0.00000 1.00000 0.00000 -0.15169 0.00000 0.80420 0.00000 -0.51154
0.00000 -1.48142;\
0.00000 1.00000 0.00000 -0.15169 0.00000 0.49332 0.00000 -0.51154
0.00000 -0.71758;\
0.00000 1.00000 0.00000 0.12127 0.00000 0.18245 0.00000 -0.51154
0.00000 0.72284;\
0.00000 1.00000 0.00000 0.80367 0.00000 0.80420 0.00000 -0.51154
0.00000 0.31165;\
--------------------------------\
ERROR: matrix is ill-conditioned or badly scaled, condno = 1e+08\
\
\
--------------------------------\
-------- ERROR: READ THIS -----------------\
--vvvvvvvvvvvvvvvvvvvvvvvvvvvvvv-----\
Possible problem with experimental design:\
Check for duplicate entries and/or lack of range of\
continuous variables within a class.\
If you seek help with this problem, make sure to send:\
1. Your command line:\
mri_glmfit --y lh.volume.BDHC3Study.10.mgh --fsgd FSGD/BDHC3Study.fsgd --C
Contrasts/HC3-BD3.mtx --C Contrasts/BD3-HC3.mtx --surf fsaverage lh --cortex
--glmdir lh.volume.BDHC3Study.10.glmdir \
2. The terminal output of this program (ie, everything it prints to the
screen)\
3. The FSGD file (FSGD/BDHC3Study.fsgd)\
4. The design matrix lh.volume.BDHC3Study.10.glmdir/Xg.dat\
Attempting to diagnose further \
SumSq: Min=6.368664 (col 8), Max=16.261612 (col 7)\
... could not determine the cause of the problem\
--^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^----\
}
mri_glmfit.log
Description: mri_glmfit.log
Xg.dat
Description: Xg.dat
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
