External Email - Use Caution Dear Freesurfer users,
I'm looking for a follow-up to the following thread: https://secure-web.cisco.com/1CwBvdV81hlu3V-nr4FFAU9BtvPdQA7xOATLE9DZ90A1TRYM-4EQNddbAzkoxDdIZG3qiZBq1mGoxmub6AYx2uufL4iZsS01jScD5ZFnqpnd-T_c8TW3HftCP1I0DEuSlG1lsBm9R4uVkaU4LJxGFzESpY95HOkKbyPsfsVLEVkAw4mlj0PVqvW7IUTZDOOW0qiN4ummGl1i7kdmyBAhUur7B1pSQ_MHFrcUg_ptmDECtwSvExQRFdtAtzCOnYN7wi_CemyUDyrDCHyjbNwItaVmQPZ4o0QYitoTPdUbhZEG5uyn3Gkb7kvXHsHkLzg28Anw1harmu70qP-7QGBbRog/https%3A%2F%2Fwww.mail-archive.com%2Fsearch%3Fl%3Dfreesurfer%40nmr.mgh.harvard.edu%26q%3Dsubject%3A%2522%255C%255BFreesurfer%255C%255D%2BUsing%2BSchaefer%2B2018%2Batlas%2Bwith%2BFreeSurfer%2522%26o%3Dnewest%26f%3D1 It seems that some developments were going one at that time in order to make this additional feature. If not, are there any suggestions on how I can proceed? My goal is to evaluate thickness in the areas of the Shaefer atlas (e.g. 200 Parcels, 17 networks). I would like to use freesurer instead of other methods, because I've already run recon-all on my subjects I also found these two threads and I followed them: https://secure-web.cisco.com/18ThCQthzRDLUIFuFhE3YIwmFpsZmPh1YYNCGMJ2pk946QLNHHHhaUAhqwOSsrgeSkwTAS3q8MEa8GqeECSB1twTuYCw6Xhz4Gu8nsEbfzMv1rnIBueJ5W9f1EpANoXXCrGO7efuwvg6hRkzLhK7qKK8fc9x5cqXrybOoG_kc4i4_kOZBDhVRQU01zYn9g7Rvc9Wubt1NoN57d3L-vHXkF-4TXnvrhRx1DYdnDkSSrM5ninjG5T8deQtC33SfSWlonHmQaSxwC2wLSkuOBBA08ZO_u4CCfbzGzK9tWMRac64o1eH8-BN0IfxARwNSBo-4OUkG-W7EkUxDg1si16lSSA/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg64872.html https://secure-web.cisco.com/1LlRbEwO6izBxoa40Ec6gp9DEucysGSq1sGJtDzjPgkGsQjuasuLLdkfvTDskvsstFZWQ7xSr21RJHxZ-tm-VnzRXSGEUlI3fzzkrlvwgluVn1G2jkullZt3CFtWcat7C4pTA8TN5ue_6ApIj-7mH5L7Seau5jVzX_NKHYJjDuOS8nHVLtkWyhfbjTcoXfVtYlM0TtW5en8-RlXU-zLULp8jn2uOd43W_Hyi6WTy87YmZnYRhGJVahGb8dJrKyJf453C1wHCZ7RLNQbTqZxdxsIeScJChr7oJ_cgRJyyQTEPgHl5Zzga6AAkh1xekxLqtVtIT8JqQemYSLs90MbTfVg/https%3A%2F%2Fgithub.com%2FThomasYeoLab%2FCBIG%2Ftree%2Fmaster%2Fstable_projects%2Fbrain_parcellation%2FSchaefer2018_LocalGlobal%2FParcellations%2Fproject_to_individual https://secure-web.cisco.com/1asVqnAkeW3NaKs3L475aFajf436YyeOdGEa_14PcTHgCRwDm_yJHdCS2_XKh6EaD3y6rF8yNWVVDCFtZP5z3jhRbt5ZYZ1T864k30g8GeyHHovL4FivP990cU-Oh5XuHIWdpXdKLiv6Fs1P6uu803eKi8LQiitWTI6bhs19seDicjuPlz2hbZpRwORME9zImkisQgrh2q_4q47rXnrI_y7LS2_ZVY_sO_l37gSWl54qmInN5lJJHRH8uI91gewb93IxnxO4nRPXgV7tUsfNbv8Z-jvCd5JqSd6eWrHc1KMxhJxoe0XPCWzv3yasSPDTwRDGrlja_-TwTIiAiMcuZ_g/https%3A%2F%2Fwww.dropbox.com%2Fs%2F1vk6zjus5nogd0z%2Fgcs_Schaefer2018_update20190916.zip%3Fdl%3D0%26file_subpath%3D%252Fgcs However, these informations have not been very helpful because the .annot file (derived from gcs files) doesn't contain any surface information. Thank you in advance for any help. Best, Riccardo
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