Are you trying to run this from outside of recon-all? If not, can you
send the recon-all log file? Also, have you looked at the talairach
registration?
On 8/15/2022 7:50 AM, 丁晴 wrote:
External Email - Use Caution
Hello FreeSurfer Developers,
I'm attempting to generate filled.mgz using the mri_fill -a
*/ponscc.cut.log -xform */talairach.lta
-segementation aseg.auto_noCCseg.mgz wm.mgz filled.mgz
Error : *** Error in `mri_fill': double free or corruption (!prev):
0x00000000014aab70 ***
And before the error:
INFO: Using
/home/qding/FBIP/pipeline/KM_test/2//KM002/mri/transforms/talairach.lta
and its offset for Talairach volume ...
using segmentation
/home/qding/FBIP/pipeline/KM_test/2//KM002/mri/aseg.auto_noCCseg.mgz...
reading input volume...done.
searching for cutting planes...voxel to talairach voxel transform
1.26345 -0.00883 0.01215 -37.76160;
0.05445 1.62947 0.37797 -140.90414;
-0.00773 -0.25421 1.23906 -2.18153;
0.00000 0.00000 0.00000 1.00000;
reading segmented volume
/home/qding/FBIP/pipeline/KM_test/2//KM002/mri/aseg.auto_noCCseg.mgz
voxel to talairach voxel transform
1.26345 -0.00883 0.01215 -37.76160;
0.05445 1.62947 0.37797 -140.90414;
-0.00773 -0.25421 1.23906 -2.18153;
0.00000 0.00000 0.00000 1.00000;
segmentation indicates cc at (125, 108, 153) --> (3.0, 25.0, 20.0)
Looking for area (min, max) = (350, 1400)
area[0] = 2589 (min = 350, max = 1400), aspect = 1.11 (min = 0.10, max
= 0.75)
need search nearby
using seed (125, 108, 153), TAL = (3.0, 25.0, 20.0)
The details of bug is attached in the attachment.
The data come from a macaque.But I can use ""mri_fill" with -CV -PV to
generate filled.mgz
I've searched the list and no similar error have been reported.
Looking forward to your reply.
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