what is your mri_gtmpvc command line?
On 6/19/2022 2:22 PM, Bouchra Guelib wrote:
External Email - Use Caution
These are the missing regions in which I want to obtain their SUVr.
Left-Lateral-Ventricle, Left-Inf-Lat-Vent,
3rd-Ventricle, 4th-Ventricle, Left-vessel, Right-Lateral-Ventricle, Right-Inf-Lat-Vent, 5th-Ventricle, WM-hypointensities, Left-WM-hypointensities,
Right-WM-hypointensities, non-WM-hypointensities, Left-non-WM-hypointensities, Right-non-WM-hypointensities, Optic-Chiasm, CC_Posterior, CC_Mid_Posterior, CC_Central, CC_Mid_Anterior, CC_Anterior.
This is what I get when I applymri_gtmpvc.
I already followed the link that you submitted to me.
Le dim. 19 juin 2022 à 15:54, Douglas N. Greve
<dgr...@mgh.harvard.edu> a écrit :
On 6/15/2022 7:40 AM, Bouchra Guelib wrote:
External Email - Use Caution
Hi,
I wonder if someone can help me to do something similar to that:
" the mean intensity of each FreeSurfer region (ROI) for the 45
subcortical and the 68 cortical regions were assessed the mean
intensity of each FreeSurfer region (ROI) for the 45 subcortical
and the 68 cortical regions were assessed to obtain SVU".
Also, I found an article that mentioned that " the estimated
total intracranial volume (eTIV) is calculated, which is used
later for normalization of the volumetric measures".
My questions are:
1) In " gtm.stats.dat" not all subcortical regions are mentioned,
why?
which ones are missing?
2) I applied "mri_getmpc" to obtain the mean intensity, however,
I could not figure out what I should do after this step to obtain
the mean intensity and compute SVU.
Do you mean mri_gtmpvc? the values will be in the gtm.stats.dat file
3) why do they use eTIV, should I use it, and if yes how!
I don't know. It does not make sense to correct an intensity with
eTIV.
btw, I assume you've seen this page *MailScanner has detected a
possible fraud attempt from "secure-web.cisco.com" claiming to be*
https://surfer.nmr.mgh.harvard.edu/fswiki/PetSurfer
<https://secure-web.cisco.com/11lfuSnUl9w3h9Z18W6RjGbXg4yDv-3fW_VwCgPcK0MKpqIEgwfHSpVaj1YEx5PJfyFc68G0JtWihX6t3diQDXq8yaFQO9Je6SCNJYp-EeRtsGEzqIgHqfAOD0k51ASu89BiIu9TkU8w64pAJ6IAJBkfKYKW4qnakZIHQwje9eQRI80k8Lf_Y85maOKCcT0MNsdkyXw3wTk0fbbLy2z3bf6yDl7hz3Gjaz9i1azyger-vXc5sW10n9afmkMiMHj3-NxiHVryG3AqHBkAJgVSKoy3ZmHETymKPmXmWNOpt3OdL7H_LaYVYsA6ZbQ6MgzhA/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FPetSurfer>
?
best regards.
--
*GUELIB Bouchra: *Ph.D. student
*Lire *Laboratory
University: Constantine 2-Abdelhamid Mehri- *Algeria *
Alternative email: guelibbouc...@gmail.com**
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
*MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be*
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://secure-web.cisco.com/1tJiVW4DA6nl89NLr1MA90ucm75k1Qj4zjYs9bBZl9TfjL89btPtk52_q-FUE52664jSIoJsQQo_HNgJEyTaHCUEMFub25rNL8Yash3BD9qNu_EMdV0MsltQdlNnvVuhGOcs-RNOeKx6-4LpVpjY3BAXxMfpVYgNx3vFjZHe8yM3TZUuk5pxkvIWJOQZZWYcNBuy5WBrwp6fDiyWfXcMVE3laalCdbzmiXk11yZ6Vb27DMnuAhYOoc6dFXpF1D8G0LZSoeNq7RdvX--jWjauQWA8OEQbFxpNHt7AaAHzbBFvaMmfDIdE4cjUsutWX77Iz/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer>
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
*MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be*
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://secure-web.cisco.com/1tJiVW4DA6nl89NLr1MA90ucm75k1Qj4zjYs9bBZl9TfjL89btPtk52_q-FUE52664jSIoJsQQo_HNgJEyTaHCUEMFub25rNL8Yash3BD9qNu_EMdV0MsltQdlNnvVuhGOcs-RNOeKx6-4LpVpjY3BAXxMfpVYgNx3vFjZHe8yM3TZUuk5pxkvIWJOQZZWYcNBuy5WBrwp6fDiyWfXcMVE3laalCdbzmiXk11yZ6Vb27DMnuAhYOoc6dFXpF1D8G0LZSoeNq7RdvX--jWjauQWA8OEQbFxpNHt7AaAHzbBFvaMmfDIdE4cjUsutWX77Iz/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer>
The information in this e-mail is intended only for the person to
whom it is addressed. If you believe this e-mail was sent to you
in error and the e-mail contains patient information, please
contact the Mass General Brigham Compliance HelpLine at
*MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be*
https://www.massgeneralbrigham.org/complianceline
<https://secure-web.cisco.com/1-LW5vdxo_6MoxyzhjE3GUr083cAKQ778OCcgM09Un7fu-nicaUFDVuF7xkazptqXDmw4WmSLeoAmO_H-zs-p394x9SGkdgQ2IWT4EZ9Z5D71xWX7uVoJLC6aGW829xU1GbCeC5zbxqOusgJ4KeUZ6vmoHwbE0NOHy2vG0Nvn-uStJL_SSrFICazbieYi02iZN9u0deKD9dXg--BKgc3QfvrzVEVcfleaCfAP3fnt1tF5f0232H4v9mi4lBp2eZUBPWFgAnvIz4fhYS0RyaKDoySYaC70OxA6VgtenFlxUHCrcAbQr5mXNGwe0bBmpaEm/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline>
<*MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be*
https://www.massgeneralbrigham.org/complianceline
<https://secure-web.cisco.com/1-LW5vdxo_6MoxyzhjE3GUr083cAKQ778OCcgM09Un7fu-nicaUFDVuF7xkazptqXDmw4WmSLeoAmO_H-zs-p394x9SGkdgQ2IWT4EZ9Z5D71xWX7uVoJLC6aGW829xU1GbCeC5zbxqOusgJ4KeUZ6vmoHwbE0NOHy2vG0Nvn-uStJL_SSrFICazbieYi02iZN9u0deKD9dXg--BKgc3QfvrzVEVcfleaCfAP3fnt1tF5f0232H4v9mi4lBp2eZUBPWFgAnvIz4fhYS0RyaKDoySYaC70OxA6VgtenFlxUHCrcAbQr5mXNGwe0bBmpaEm/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline>>
.
Please note that this e-mail is not secure (encrypted). If you do
not wish to continue communication over unencrypted e-mail, please
notify the sender of this message immediately. Continuing to send
or respond to e-mail after receiving this message means you
understand and accept this risk and wish to continue to
communicate over unencrypted e-mail.
--
*GUELIB Bouchra: *Ph.D. student
*Lire *Laboratory
University: Constantine 2-Abdelhamid Mehri- *Algeria *
Alternative email: guelibbouc...@gmail.com**
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Mass General Brigham
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline
<https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.
