The conformed space is an anatomical one, so I’m still not clear what
“anatomical space” you want to map it to. What are you trying to do with it?
And when you visualize the label in freeview in the volume does it appear in
the correct location?
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Sam W
Sent: Friday, June 3, 2022 10:46 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] labels in anatomical space
External Email - Use Caution
Hi Bruce,
Thanks for your help!
I got the label after running mri_annotation2label using the
label\lh.aparc.annot file on an individual subject. I always assumed (maybe
wrongly) that labels correspond to surfaces and are defined in freesurfer's
conformed space.
Best regards,
Sam
On Fri, Jun 3, 2022 at 4:33 PM Fischl, Bruce
<bfis...@mgh.harvard.edu<mailto:bfis...@mgh.harvard.edu>> wrote:
Hi Sam
We need more information. What do you mean by “freesurfer space”? Is it on an
individual subject or fsaverage? Volume or surface? How did you create it?
Cheers
Bruce
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
On Behalf Of Sam W
Sent: Friday, June 3, 2022 9:12 AM
To: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: [Freesurfer] labels in anatomical space
External Email - Use Caution
Hello!
I have a label in freesurfer space, and I would like it to be in anatomical
space. Is this possible?
Best regards,
Sam
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