External Email - Use Caution Sorry for the typing error. How to change --annot within fspalm
Many thanks Wenjun On Thu, May 19, 2022 at 11:26 AM Wenjun Huang <wh2...@nyu.edu> wrote: > Many thanks! > > Best, > Wenjun > > On Thu, May 19, 2022 at 11:25 AM Wenjun Huang <wh2...@nyu.edu> wrote: > >> >> I'm attempting to use fspalm ( >> https://secure-web.cisco.com/1P6HkzX875RFyYC5DsJmukY3Fbs-Qqtjv6rlOJ_FqTCcbRzXXaC3C9hWNAyVf_rvjMfZTnZ2wK6wFMXEUD2NLaXRvT9q3RTaK7v_JDiIaIvWaboP1EVp9CaPTA8rYfHvco3_XW626nnwJl5tRpZvR0O64hwV4a8z0Swbl5enkPvxWAnT44wdJBFyh_k8TseMCzNiKe3LgW9eJMoQsaHXwuhHR6hE9z2IK-ZTPVa-oR_K7-l_3EqYngB6llfbiLIYditaVDu-jurGQmC0rkJaGztFuC9V4glvPNWfscCZ_y9eOwPb2Liz-wDTTcbGLUs4zCWHebTWfoc_zGCmdR8vaAQ/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsPalm%3Fhighlight%3D%2528PALM%2529), >> and I copied fspalm, mri_volcluster, and mri_surfcluster into >> $FREESURFER_HOME/bin. But get error: MRISread(): could not open file >> mri_surfcluster: could not read surface >> /home/lipalab/Desktop/hwj/GLM/children/fsaverage/surf/lh.white---------------------------------------------------- >> Reading source surface >> /home/lipalab/Desktop/hwj/GLM/children/fsaverage/surf/lh.white >> And after I copy mri_volcluster, and mri_surfcluster into >> $FREESURFER_HOME/bin, I got this error when I run mri_glmfit-sim. >> I wonder if it's because of my freesurfer's version? And if it works for >> me if I get a newer version, will it be ok if I recon-all, mri_glm-stim, >> mri_glmfit-sim on 6.0v and do the fspalm on 7.2v within one project? >> >> I've searched the list and no similar errors have been reported. Does >> anyone have any thoughts on how to trouble-shoot this one? Also, I've >> attached the fspalm.log and in case it's of any use. >> >> 1) FreeSurfer version: >> freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1-f53a55a >> >> 2) Platform: Ubuntu 18.04 LTS(Bionic Beaver) >> >> 3) uname -a: Linux lipalab-Precision-5820-Tower 5.4.0-100-generic >> #113~18.04.1-Ubuntu SMP Mon Feb 7 15:02:59 UTC 2022 x86_64 x86_64 x86_64 >> GNU/Linux >> >> 4) fspalm.log and perm.th40.abs.mri_glmfit-sim.log: see attached >> >>
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