External Email - Use Caution Hi, I'm attempting to use segmentThalamicNuclei.sh( https://secure-web.cisco.com/1RV2omTbdlZNcuz2LjtNOfF_gXU-a1Zh7ZafxTa7vX-y1Z1LZxS0Oc2hhSnAz_ddkvbDogx-Es0B0cIzDL7ZBQVIpT6ABl0fiNwLa2arhoBRKoZI3G7JqVRilClK3470W9etqhZAuTI73h8WIryqVSmuffGYEmzC_qBEEG32btzrOWzQMu9VOAIVKuqmj28MQsu5OXvYtyCs4cER6AMvnPgPPJI0vUS6YtpUl_HwDp7oWaSV9mRK8y-K_wP5aEbu9J7kJEPZWfWfOGAJMJGhb2lwlwY_UPazMa8IVL41TmNiDPm7g7M7rOhQaCy2au5RE7zQeKh_oFyOhOuSLImPFMQ/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FThalamicNuclei%3Fhighlight%3D%2528ThalamicNuclei%2529 ),segmentHA_T1.sh( https://secure-web.cisco.com/1LhDcP1FH1KgfwvDWIRfvii3lB4d3_LJAyFBfDkPRA2sC_0Hb8PNMeYhMI4NcKHMxlPmRPi6a9qXgRGWik2fB2-82jK9ni74aHwjLZvVGvpjm75zmea3jM8w6xCFA-ydJ6g4OvIlmk29qVbMc1syd4o90De5Epz4qQH5iiIsINRgNyCQuG4LkA4M6CrmRyTk6pnfdGsodL86IFMckJFrobbcG29giqQSvutjofQM_u0iSBE-9kdsYK1w08a61MhWqWKxVomOA9Xi15vAixROnyJNU6pD3aatFme0rJl-jqDDBUxIHdvvMw6ym-g6s04b_SgAnHVm0ya5BMT8lsIHSsg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FHippocampalSubfieldsAndNucleiOfAmygdala), segmentBS.sh ( https://secure-web.cisco.com/1Zcp3K-vS0QBfdAhIw0PbtQM6onkntbEtV2RlFJ3B_lENy1E-wg27W_Gh0fGz82KSfAlOsZxX_v-7bWnUfdCo3RIiqi1IC4tko3xKJzlOn4RCQ54Y7FKBy_-sUsdyEEywe9DHLBxJ1pjnVFVVHt2fNK2Ekma3VtOJ24mwTYw9IYIINbggoa8yIEvZhFQR9pdz4gAh-8zxcFO5DCO0iIlezhB1tXTmtggLzgCmtVzepI4zoKCpyF9oEDq-Bx-w-YD5eJFfx2ZVrqjDyvdFNyI90b_OY9SVbeLcHwaFD5Tpyd8JlWxWb_Yzgpg9fs6a67VuZTpM2S06gsX3z9YVMm6CBA/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FBrainstemSubstructures). But I have done all the recon-all on version 6.0. So I wonder if it's ok if I run recon-all on 6.0v and do the three segments on 7.2v within one project?
I've searched the list and no similar errors have been reported. Does anyone have any thoughts on how to trouble-shoot this one? Many thanks, Wenjun 1) FreeSurfer version(recon-all): freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1-f53a55 2) aFreeSurfer version(segmentThalamicNuclei.sh,segmentHA_T1.sh,segmentBS.sh): freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b 3) Platform: Ubuntu 18.04 LTS(Bionic Beaver) 4) uname -a: Linux lipalab-Precision-5820-Tower 5.4.0-100-generic #113~18.04.1-Ubuntu SMP Mon Feb 7 15:02:59 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
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