Hi Taka - Does it work when you remove the "--1d" from the command line? I
think that must be an error in the documentation.
Anastasia.
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Tarumi Takashi
<tak...@gmail.com>
Sent: Wednesday, January 12, 2022 7:04 PM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] mri_glmfit-sim error: Flag --1d unrecognized
External Email - Use Caution
Dear FreeSurfer Developers:
I am attempting to perform cluster-wise correction for the along-tract
measures, as described on the Tract statistics tutorial (MailScanner has
detected a possible fraud attempt from "secure-web.cisco.com" claiming to be
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TraculaStatistics<https://secure-web.cisco.com/1k_UHTgDkMyztiBV5VO6PazEUkIHIp4tFCos8o1vMfT5XasrL80AhnLun3nO3SbemuhiScR_HhzrdGaw0p1j5nK5lhe10k7-lPaCijiC0Vh7MQ0yuekVDkLDVrJqmG8Iv7dJngPrQuEM0Hi8ZnXXatPZFWA1aWQoWHkUSICt5kTu0nJuvpZHOUVg_RNMdlWUhH2kGUUGxeihwX0Nt22xOH5wPY2jNspczuzK2y2bSu-wVlXPvrnE1NXoh1Xk07_LOqY3hqWmAMeIEzH8SYeketuWolK-kKBMySEzU8Qcf85MkxF8ulxY7sh4wOn1doxI61CJ2S55Gnkqug92Kav4Oew/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FTraculaStatistics>).
But, when I run the command below, the flag --1d is not recognized.
Command: mri_glmfit-sim --glmdir cc.bodyp.FA_Avg.glmdir --1d --cwp .05 --perm
1000 1.3 pos
Error: Flag --1d unrecognized.
I could not find similar errors reported. Does anyone have any thoughts on how
to trouble-shoot this? The FreeSurfer version I'm using is 7.2.0 on an M1 Mac
machine with macOS 12.1. Thank you so much for your help.
Sincerely,
Taka
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