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Hello FreeSurfer Developers,
When I used the FS.dev version for hypothalamus segmentation, I have segmented
it sucessfully.
Tensorflow-CPU has been installed to run this module (hypothalamus_seg).
The .sh file was:
for subj3 in 111 112 114...and 431
do
mri_segment_hypothalamic_subunits --i
/run/media/guanliyuan/Elements_Learningmaterials/try3_fs/$subj3/mri/orig/001.mgz
--o
/run/media/guanliyuan/Elements_Learningmaterials/try3_fs/try3fs_seg/$subj3/
--vol
/run/media/guanliyuan/Elements_Learningmaterials/try3_fs/try3fs_seg/$subj3/
--threads 1 --cpu
done
However, in the .csv file of some subjects, there were no the volume of the
left and right anterior-inferior. I don't know the reason for this cese.
I am looking forward to your reply. Thanks very much in advance.
The results were:
| Subjects left anterior-inferior left anterior-superior
left posterior left tubular inferior left tubular
superior right anterior-inferior right anterior-superior right
posterior right tubular inferior right tubular superior
whole left whole right |
|
|
|
|
|
| 314 | 0 | 4.529 | 67.887 | 25.924 | 56.559 | 0 | 6.571 | 87.712 | 44.5 |
83.406 | 154.899 | 222.189 |
|
|
|
| 331 | 14.973 | 23.419 | 128.191 | 152.167 | 140.735 | 0 | 3.832 | 111.306 |
122.421 | 97.331 | 459.485 | 334.89 |
|
|
|
1) FreeSurfer version: freesurfer-linux-centos7_x86_64-dev
2) Platform: CentOS 7.9
Sincerely,
Zhang
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