Hard to say what is going wrong from that. Can you try removing the
trailing "/" from the subject name? Also, do you need --conform? Often
the recon-all output is already conformed, so --conformed is not usually
needed. It would be interesting to know if this is making it fail.
On 12/6/2021 5:40 PM, Zeng, Victor (BIDMC - Keshavan - Psychiatry) wrote:
External Email - Use Caution
I receive this error when I try to run mri_sclimbic_seg in dev 2021 12 06
How can I fix this?
mri_sclimbic_seg --s 10105_S1200QUM/ --conform
/usr/local/freesurfer/dev7/python/scripts/mri_sclimbic_seg --s
10105_S1200QUM/ --conform
Excluding seg [853]
Using CPU
Using 1 thread(s)
Loaded lookup table /usr/local/freesurfer/dev7/models/sclimbic.ctab
Loaded population stats
/usr/local/freesurfer/dev7/models/sclimbic.volstats.csv
Segmentation fault
Victor Zeng
Beth Israel Deaconess Medical Center
Keshavan Lab
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