Hi Ali
What directory are you running from? You need to specify the full paths
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Alison McDonnell
Sent: Thursday, December 9, 2021 11:11 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] FREESURFER
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Hi Bruce,
Thank you for clearing up the differences. Im getting an error to say there is
no such file and that couldn't open the file. was wondering if you had any
ideas why this would be as I can see the file in the folder.
Thanks,
Ali
[cid:image001.png@01D7ECED.DC7D4340]
On Thu, 9 Dec 2021 at 15:33, Fischl, Bruce
<bfis...@mgh.harvard.edu<mailto:bfis...@mgh.harvard.edu>> wrote:
Hi Ali
mris_convert converts surface while mri_convert converts volumes (in general
these prefixes hold across all our binaries – the mris_ ones do surfaces and
the mri_ ones do volumes).
To convert a patch you need to tell mris_convert that it is a patch and not a
complete surface by giving the -p flag
Cheers
Bruce
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
On Behalf Of Alison McDonnell
Sent: Thursday, December 9, 2021 9:46 AM
To: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: [Freesurfer] FREESURFER
External Email - Use Caution
Hi all,
I'm trying to use mris_convert and can't get it to work.
current command I'm using:
mris_convert lh.full.flat.patch.3D lh.full.flat.patch.3D.asc
also can't seem to find the difference between mris convert and mri convert so
don't know if I should be using that instead.
any advice would be appreciated
thanks,
Ali
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