External Email - Use Caution Sorry, I just realized that I sent a wrong trac-all.log and trac-all.error file.
________________________________ From: Salar Dini, Elaheh Sent: Friday, December 3, 2021 5:11 PM To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu> Subject: follow-up on trac-all -prep -c error Hello Anastasia, Thank you so much for your response. It was very useful. I have changed the config file to the one I'm attaching to this message, but I'm still getting the same error: ERROR: for B0 distortion correction with reverse-polarity DWIs ERROR: or for model-based eddy-current distortion correction, ERROR: must specify PE direction I don't get any log for error file in this instance too. However, if I change the doeddy from default=2 to 1, it starts to work with an error later on. I'm attaching the log file, and error file for tra-all with doeddy=1 to this message too. Lastly, I wanted to ask if the fact that we ran recon-all with freesurfer version 6 and do the TRACULA with version 7.2.0 is problematic here? In other words, should the segmentation of T1 be done by same version of freesurfer as the one that trac-all is used from? Thanks again very much for your help. Ela
trac-all.log
Description: trac-all.log
trac-all.error
Description: trac-all.error
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