Hi Isaac
You can use tools like mri_and mri_or to generate results, or use the FSL
tools, either way is fine
Bruce
-----Original Message-----
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of I. Kelleher-Unger
Sent: Thursday, September 30, 2021 10:38 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Fill between two surfaces
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Hi Bruce,
Thanks for your quick reply!
mri_ribbon is exactly what I was looking for! Thanks for your help on that.
Ultimately I want to find the overlap between the output of mri_ribbon and an
atlas ROI.
Is there a tool in freesurfer for this (preferred option to keep within the
same ecosystem) or would I be best off using something like fslmaths with the
-mas flag?
Thanks again for your help!
Isaac
> On 30 Sep 2021, at 3:19 pm, Fischl, Bruce <bfis...@mgh.harvard.edu> wrote:
>
> Hi Isaac
>
> Yes, you can use mris_fill on the two surfaces, then intersect the resulting
> volumes. We use the binary mri_ribbon that does this for you, you can try
> that out instead if you want.
>
> Cheers
> Bruce
>
> -----Original Message-----
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> <freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of I.
> Kelleher-Unger
> Sent: Thursday, September 30, 2021 9:38 AM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: [Freesurfer] Fill between two surfaces
>
> External Email - Use Caution
>
> External Email - Use Caution
>
> Hi there,
>
> Apologies if this is a basic question: I have two surfaces and I would like
> to make a ribbon/mask of the area between the surfaces. How could I go about
> this? Is mris_fill the right tool to use?
>
> Thanks for your help!
> Isaac
>
>
>
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