Sorry, we don't support that atlas. Have you tried contacting FSL?

On 9/23/2021 7:08 AM, DRON Noramon wrote:

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Dear Freesurfer Team

I have a very naive question. I am in urgent need to get a cortical region volume base on the Harvard-Oxford Cortical Atlas(from FSL). I have T1 images in nifti files, brain extracted. How can I get the cortical volume using Freesurfer, and regions based on the Harvard-Oxford Cortical Atlas? Please, I am very new to Freesurfer and in the middle of installing Freesurfer to linux server. Can you tell me the steps or a link to your tutorial page? I am trying to find it on your wiki page and have trouble navigate around.

Thank you in advance,

Best regards
Noramon
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