External Email - Use Caution Hi Gregorio,
You should be able to use mri_binarize to create masks from the hippocampal seg files https://secure-web.cisco.com/1qpMewyxfLa5R6eiYrzcf1qqqYJYO4CO0D3YKhBtxNKEZ97mm-iZPnbTazVbnV6aErI2Y4G6Iodqtpa7eRC6MzifD_tow_ROWRGLcJnlSoJoMvp7kVi4-NzdGcgOXnCxvL_lSCZaXbqG3XLhJaAywLMIDLaz3QSTj4SFdnfiA_XaobFuU3Vszfimx0H-mrVHzEu1psFYADQETFapJU2yA13royxP6s3y3A4xRa8QzLkibMPYxRtOvqNwlO8-rBKz-ARyjbQKYy9MPtinh74_FNg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2Fmri_binarize -Paul On Mon, Jul 19, 2021 at 3:40 AM Gregorio Borghi < gregorio.borghi...@gmail.com> wrote: > External Email - Use Caution > > Dear sir/madam, > > I have successfully segmented my participants' hippocampus thanks to > "segmentHA_T2.sh" command, which provided me both right and left > hippocampal segmented files. However, I was wondering if it is possible to > obtain single files for each of the hippocampal subfields (e.g. CA1 and > CA3) since I would like to use those files as masks and I need them to be > distinguishable. Thanks in advance. > > -- > Kind regards, > Gregorio > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1Ozt0tjAoon4wkd2Gvgt8DCEycnDDW6WrkDhaH6YfZ6Q4feG984oqb8vmbidCuXHuGiQmSzAwxXImhTYbVRQLl3uT1OqUnKj9iEZSikna9M8gpnDbyaabKcNPaTOBe4N-vrulcPwP7QSRgtVKhTMswmpDVVrXmwo-62UnM4Qf2j3ckGJwkN2C4vmiX0tGV5g1H3I7KO_gNftN1cqYgx8FjBZ7oAdnXi2E5W3PAdON0jTscFph2VOHZsqjih2l-JQBvqnCOMr5_3f9YTxZkySEHw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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