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Dear FS experts,
when running mris_compute_lgi, the make_outer_surface step produces an error:
>> reading filled volume...
/bin/bash: /scratch/tp81860215899812157.load_mgh.m.mgh: Permission denied
ERROR: could not open /scratch/tp81860215899812157.load_mgh.m.mgh for reading
Looking more closer at what produces the error, it is the MRIread function:
vol=MRIread('..../surf/tmp-mris_compute_lgi-rh.pial/rh.pial.filled.mgz')
/bin/bash: /scratch/tp81861321896965219.load_mgh.m.mgh: Permission denied
ERROR: could not open /scratch/tp81861321896965219.load_mgh.m.mgh for reading
ERROR: loading ..../surf/tmp-mris_compute_lgi-rh.pial/rh.pial.filled.mgz as MGH
vol =
[]
I do not understand where the /scratch/tp81861321896965219.load_mgh.m.mgh is
created/located. Is it within the rh.pial.filled.mgz? Even going through the
MRIread function I couldn't figure out. Maybe the error is actually in the
mri_fill step (that however exits with no error)
Thanks in advance for any hint
Fabio
Dr. Fabio Bernardoni
wiss. Mitarbeiter
Division of Psychological & Social Medicine and Developmental Neurosciences
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