External Email - Use Caution Hi Rosie,
For cortical thickness, check out *.aparc.*.stats files (e.g, lh.aparc.stats, lh.aparc.a2009s.stats, lh.aparc.DKTatlas.stats). There is more info in the ROI analysis tutorial: - https://secure-web.cisco.com/15BXH9iwkvAUJ2mnf7udx7SdsKrQQYNrTO61RpUPKdnieLJKqERB5mvRrnm7cOrATPnxd7IXM7nk8vY9zR-iS6vP2NwrHAkj7CSI3WBS1QS8rD3aER9JlHdirUm0C1skuCSb0Zj0vRmn6q4JW16yrNaowgeMQHGwC4J8EJdYnjwoSQTYC1me7pMfclBdrvOg-R9G7kmCKJ8Cx_0_UVg1Iqkr3h-Jv8OFNf-mRkmH7B51QaKzzF1q7YVasJZWZlvqAhUC_vZ0jqLMDssuF6axfrg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FAnatomicalROIV6.0 - http://secure-web.cisco.com/11konKzcN75CItWAIgFCWfEXU5fG9rYHy9qXZfPC5tgF0-KkV2XyDSRU4qVsLyN0X3KRAsHb4lMoQgq6UI_K1y5Zw7S3eqYcymXf8V_aRo5HM8OvVYCimLRf7aXEcw0BXt-v8jOlTaA5S6pnpIDyFs_VGUaDGYzJGO7ER8rVfwn8jr4_gJ41gnCcq_76tuD7RZ_yJ5fPPXYVAZmvCPcGI235KVgfwcrzL36vEVp9ReVWXDAHexGeadO9vvrsI7unGPjAO2yVXV8ZEORwG8C0iug/http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fpub%2Fdocs%2Ffs.roi.EB_wiki.pptx - https://secure-web.cisco.com/1xzPihpYli8qjtCXIgus5VJlEXiRWD1ZGJd9d35zuGRR7QVtG6x8F5OVZl0oPJI3FOCUVrwL3sMJlzJrcPvv5o8_ety52kBawlD8VtFKdoqAoIBUBlzu64f9X8JMHTQEDevFFFnOJpZsSd4J-JuGYcRt5XW4LroD4MqH2c6def-eqHso8Yqk70XN6EoyK4hzR1q9od9MHpxS1YB9l6U7y79vezNlDK-oSzAK6kJYSSxWPvv74KgEf8w9gAirwIT6YYu9P74pMeGtL15-aryRatw/https%3A%2F%2Fwww.youtube.com%2Fwatch%3Fv%3Dn5QkCwZZPko%26t%3D294s -Paul On Mon, Jun 14, 2021 at 10:09 AM Rosalia Dacosta Aguayo <rdacos...@gmail.com> wrote: > External Email - Use Caution > > Dear Freesurfer's experts, > > I run FreeSurfer and I got the following stats: > > rosalia@rosalia-Lenovo-Y520-15IKBN > /media/rosalia/Nuevo_vol/ARTICO/derivatives/freesurfer/sub-003/stats $ ls > aseg.stats lh.BA_exvivo.thresh.stats rh.aparc.stats > lh.aparc.a2009s.stats lh.curv.stats rh.BA_exvivo.stats > lh.aparc.DKTatlas.stats lh.w-g.pct.stats > rh.BA_exvivo.thresh.stats > lh.aparc.pial.stats rh.aparc.a2009s.stats rh.curv.stats > lh.aparc.stats rh.aparc.DKTatlas.stats rh.w-g.pct.stats > lh.BA_exvivo.stats rh.aparc.pial.stats wmparc.stats > rosalia@rosalia-Lenovo-Y520-15IKBN > /media/rosalia/Nuevo_vol/ARTICO/derivatives/freesurfer/sub-003/stats $ > > A part from the aseg.stats file, which one should I consider if I am > interested in cortical thickness. Should I run any other step for this? > > Best, > Rosie > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1lJa7E1Vxigi2Ny7f2bPJziIvxmD2nWTYdVG5LfSz7o6KE9q86ctGfTgAZIXCfNiVKswwTxDNzqBDNU010yEy5jKPwx98p0Xp2Qdi5k-sMlNB9lXR5E4-oAszTi8tjrkIaUCUJ4k4KkYe-g0iFIozxRW-oVb9neAO7Lk_wa89H3Rv_HSDcOdTHuYeHCOTlo6-nn7waFfF-Inb7qqenPiGcaaoGMvmV3awd0aPSaBE1E_Qt2OZhNak4Kse53VQDjmTeRNwzMaOqJ8hF9YtQG7iUg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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