[Freesurfer] error when running permutation analysis

[Star Xi]

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Dear FS experts,

    Hi! I ran the commas “mir_glmfit-sim” to do clusterwise correction for permutation but received an error.

My command is:

mri_glmfit-sim --glmdir rh_thickness_fwhm10 --perm 1000 3 pos --cwp 0.05 --2spaces

And I received the following message (The whole log file is attached in the email)

Starting simulation sim over 1000 trials

mri_glmfit simulation done 21.2316

Mon Jun  7 16:34:28 CST 2021

mri_surfcluster --in rh_twoT_thickness_fwhm10/group.diff/sig.mgh --mask rh_twoT_thickness_fwhm10/mask.mgh --cwsig rh_twoT_thickness_fwhm10/group.diff/perm.th30.pos.sig.cluster.mgh --sum rh_twoT_thickness_fwhm10/group.diff/perm.th30.pos.sig.cluster.summary --ocn rh_twoT_thickness_fwhm10/group.diff/perm.th30.pos.sig.ocn.mgh --annot aparc --cwpvalthresh 0.05 --o rh_twoT_thickness_fwhm10/group.diff/perm.th30.pos.sig.masked.mgh --no-fixmni --csd rh_twoT_thickness_fwhm10/csd/perm.th30.pos.j001-group.diff.csd --csdpdf rh_twoT_thickness_fwhm10/group.diff/perm.th30.pos.pdf.dat --vwsig rh_twoT_thickness_fwhm10/group.diff/perm.th30.pos.sig.voxel.mgh --vwsigmax rh_twoT_thickness_fwhm10/group.diff/perm.th30.pos.sig.voxel.max.dat --oannot rh_twoT_thickness_fwhm10/group.diff/perm.th30.pos.sig.ocn.annot --bonferroni 2 --surf white

/Applications/freesurfer/bin/mri_surfcluster: Exec format error. Binary file not executable.

Then I used “ls -l /Applications/freesurfer/bin/mri_surfcluster” to debug  and it returned:

-rwx------@ 1 star  staff  3626968  9  7  2018 /Applications/freesurfer/bin/mri_surfcluster

I wonder what’s wrong with the command I use. ANY ADVISE would be appreciated!

THANKS A LOT!

Sida Xi, M.D.

Department of Ophthalmology

Eye and ENT Hospital, 

Fudan University School of Medicine, 

83th Fenyang Rd, Xuhui District, Shanghai, China

perm.th30.pos.mri_glmfit-sim.log
Description: Binary data

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