Hi Aldo
Usually we just run recon-all with -all instead of the individual -autorecon
options. This will give you pretty much everything, including GM and WM
Cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Camargo, Aldo
Sent: Sunday, May 23, 2021 11:25 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] How to extract the GM and WM
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Hi Freesurfer experts:
I want to extract the White Matter and the Gray Matter from a T1 image. I have
extracted the brain by using the command:
recon-all with the option -autorecon1
Thanks a lot and have a nic day,
Aldo
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