Is your question then how to isolate the cerebellar WM/GM labels from aseg?
Lila
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of A.R. Sekar
<ar...@cam.ac.uk>
Sent: Friday, May 14, 2021 12:13 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Cerebellum Segementation
External Email - Use Caution
External Email - Use Caution
Hey,
Thanks for your message. Yes I have!
Akila
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Zollei, Lilla,Ph.D.
<lzol...@mgh.harvard.edu>
Date: Friday, 14 May 2021 at 16:44
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Cerebellum Segementation
Hi Akila,
Have you run recon_all on your structural data?
Lilla
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of A.R. Sekar
<ar...@cam.ac.uk>
Sent: Friday, May 14, 2021 10:35 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Cerebellum Segementation
External Email - Use Caution
External Email - Use Caution
Hello Experts!
This is the first time I am doing tractography and my aim is to do it
specifically for the cerebellum. I saw online that FreeSurfurer can segment the
cerebellum, to create the ROI but I’m not entirely sure how to go about this.
So far I have done the pre-processing, co-registration onto diffusion space and
created FOD. It would be great if you could give me advice and any feedback
about the pipeline.
Thanks for your help!
Regards,
Akila
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