Hi Mudathir,
What freesurfer version are using? I haven’t been able to reproduce this
segfault on our end. Can you run the same command on lh.aparc.annot instead to
narrow down whether this is an issue with your lh.par.annot file or not?
best
Andrew
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of バキット・ムダシル
<m-bak...@fmu.ac.jp>
Date: Sunday, April 25, 2021 at 8:32 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Error with mris_convert
External Email - Use Caution
Hi,
I manually made annotation files on an inflated surface of 40 subjects. The
labels that makes these annotfiles are 13 in total but not present in all
subjects every time, some can be missing depending on the brains surface
morphology. I made the ctab files manually in the label folder in eluding an
unknown label in the first line. I tried to convert one of the annotfiles into
gii format and got the following error:
mris_convert --annot $SUBJECTS_DIR/spl_01/label/lh.par.annot
$SUBJECTS_DIR/spl_01/surf/lh.white ~/Desktop/spl_01/lh.par.gii
reading colortable from annotation file...
colortable with 14 entries read (originally none)
Segmentation fault: 11
What this error exactly means, and how I can solve this issue.
Thanks
Mudathir
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