External Email - Use Caution Thanks Bruce - getting back to this after quite some time now. I've managed to make a central sulcus label file following these instructions (turns out the CS was connected to the Post CS) and run it through mris-register.
I had a couple of follow up questions: How can I use the results of the above to create a corrected parcellation? I presume I need to recreate surfaces / labels afterwards - which command should I use for this? best Fraser On Fri, Mar 13, 2020 at 2:34 PM Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Fraser > > if you look at the mris_register help there is an option to specify a > manual label that corresponds to an atlas parcel: > > -L <labelfile atlas_gcsa_file label_name> > Specify a manual label to align with atlas label <label > name> > > in the past I have used this to draw a central sulcus and force it to > align > using the Destrieux atlas (since Desikan/Killiany is gyral). There are > some > very nice tools in freeview that make this pretty trivial. Overlay sulc on > the inflated surface, make sure that the dark gray of the central sulcus > (or red) isn't connected to anything else. If it is make a line using the > custom fill tool, then fill and save. Once you are familiar with the tools > it will take you about 60 seconds > > cheers > Bruce > > > On Fri, 13 Mar 2020, > Fraser Smith wrote: > > > > > External Email - Use Caution > > > > Hi there > > > > I have a clear parcellation error with one participant who does look to > have > > an atypical structure around the right post-central gyrus (looks split in > > two). > > > > Both the pre and post central gyri are shifted significantly backwards – > but > > only for the right not the left hemisphere. > > > > I see this has been mentioned before in the archives – but I have been > > unable to find a fix for this. > > > > Could you provide any tips on what to try? I am using v6.0.0. > > > > Best wishes > > > > Fraser Smith > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1Q3tNsx2i8S7u3rTrRg5kVkRbFaZIpG8ua68_LGfivdEgkpw5ajZkBI2qAfAW6x_WW3NmJF7ezbi8vamEMqg2BsJToJHTJzM-bWG7gPpnUzW8QFFwSlGdaxz9NKnWFVK2QSLWaoNNZjNoWGVDi15vQiackvItyGkj0LGM-4q9FVnua7TtVkweDmYYlFm05uM5vPf4fucRlQ8zE67WvjXc9Bc-yBCjtmGWSgpf_G3lwWD6xuJyM4oAuBab27AQ9JhEB9Q_9ofAcplsumOf66ORZQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
