External Email - Use Caution Many thanks. Best. AJ
On Sun, Apr 25, 2021, 21:45 Douglas N. Greve <dgr...@mgh.harvard.edu> wrote: > > > On 4/24/2021 5:56 PM, AJ wrote: > > External Email - Use Caution > Hi, > Once SAMSEG has finished segmenting T2 lesions, other than trying > different --threshold flags, any way to manually modify them? > > I'll let Stefano (cc'ed) weigh in. > > > Can --eTIV be added to SAMSEG? > > Not sure what you mean here. There is an etiv value that is output in the > samseg folder > > > In Samseg, can brainstem be segmented into parts, such as medulla, pons, > mid brain like through recon all? > > No, not yet > > > Can corpus callosum be segmented separately in Samseg? > > I have not tried this, but you can try > mri_cc -aseg seg.mgz -o seg.cc.mgz > > > Sorry for all the questions. > > Many thanks. > > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1l9MNqSBi0fie5JCEbRxuCBooWaZ9TWelHWYkUnVO0kk2xZmiMDHKsCDjdD2apLgW7NcUAlRac3pNuSP6Y5Xqe7dfg__snttKU8GWjzXgn0vQ8swvCylIvkzAV6hft9CK0E95RyIxF_ku7rXg_yZu4r-XNccLFcpnuXwADYJZrYRfRvz5zzKfD5ZKgQq_TdQf57e6qL5W31zULgX4CXQXMDPolUp8DNFkVeP0dWfkQV6NpAZzCa4RPMyQL-QeufB5RMFeQX1rj2cOOFXufd8e-w/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > http://secure-web.cisco.com/18603MHVkU24BOgwa-QtqkOB5hOy9G_Wx-VEc65dNFLRu0SAKq-S0i1jDgPv2hHxrJiOYGtE0XcB1w_hGjMTTGEyXyBOe1USRhqHmdpajLyrvXjV62i57H-BQRZCm2JFCzgeeVSMzmdOubfkq_31K8JO5Bnwc6YSo_BvSC6P1bYbfW4K5U825AuZicgEqWsvu6stjBB42t4U1MwfnYKFMLYZtuQIuat3m_56HLzHb5H2hctmJZvobJqaMfUNLNvriyqFjgejC2SFVe85-qMbEIA/http%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > . If the e-mail was sent > to you in error but does not contain patient information, please contact > the sender and properly dispose of the e-mail. > Please note that this e-mail is not secure (encrypted). If you do not > wish to continue communication over unencrypted e-mail, please notify the > sender of this message immediately. Continuing to send or respond to > e-mail after receiving this message means you understand and accept this > risk and wish to continue to communicate over unencrypted e-mail. >
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