External Email - Use Caution Hi, E
[weishao@gra-login1 01]$ find . -name "talairach.xfm" ./mri/transforms/talairach.xfm module load freesurfer/7.1.0 export SUBJECTS_DIR=/home/weishao/scratch/BART segmentHA_T1.sh sub-01 Best, Wei On Fri, Apr 23, 2021 at 11:35 AM Iglesias Gonzalez, Juan E. < jiglesiasgonza...@mgh.harvard.edu> wrote: > I’m assuming transforms/talairach.xfm is in there? > > Also: what was the exact command you ran? > > Cheers, > > /E > > > > Juan Eugenio Iglesias > > Senior research fellow > > CMIC (UCL), MGH (HMS) and CSAIL (MIT) > > http://secure-web.cisco.com/1Z77TacJkkAC58QyArzEVJDV_7X8Igro89XsggKNL0YRV39s2J3KnuYhyDYqdablT7K4waWew1NMuAm_1jfuvKuLUFGGcPObl7Lba56vs7bE-yV8BNN5sW4jWmKDYBCaTCHJKMt7IBlZicKoh235BDGiCfWiezwX2kIvAS3UlIuvd4PN_IFqc2iowh312LHnHDCQ53ea1gSk4H3Th6VAJ2NXlBvJM9qaLDKyFd02VgXiETYyw2tNFfN3h2cuLMizK/http%3A%2F%2Fwww.jeiglesias.com > > > > > > > > *From: *<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Wei Shao < > ws...@research.baycrest.org> > *Reply-To: *Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > *Date: *Friday, April 23, 2021 at 11:05 > *To: *Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > *Subject: *[Freesurfer] Hippocampus segmentHA_T1.sh > > > > * External Email - Use Caution * > > Hello, Dear FreeSurfer expert > > > > I tried to use segmentHA_T1.sh for the hippocampus subfields, However, > here is the log > > cannot find the wmparc.mgz or norm.mgz or talairach.xfm for the subject. > > Has the subject been procesed with recon-all? > > > > But the wmparc.mgz and norm.mgz are there > > > > > > Could you tell me how to fix this? Thanks! > > > > Best, > > Wei > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1Eun7W78BTcuyipDrWGIHKg_NsRuLOs4GO-ZrOtIG85OkXlVvZp6IvEwebF-EGHJLvKIxHkJxnrwA_ONMIv2lBS9Uv6DfnOuoxau-7DLGGrh-lPryxy4mjeHeT8fq8_CcnPObzoEJ54iSEpSV82HrEAwcsKHXm6hb3ujhqSpIhtSD03rFye6w6J7AEE8CETP8TO-ZXpupek_V0diqnrkXehUXvZXkMXJjS0U5M3QqBdE0pJGJPH56uDEDZA7K7I-9qazuodoH5LVNYDEp5fNaZA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > http://secure-web.cisco.com/11U8xUR8f2441jEGJ416m8uVq2qAjxEg-du5tbVs-2MtTwWq2aNhcq-emUFiCBDrE3ZYHesqFglrfnz6hVZWCj9jGIKgXvEEDwHTGsappvPN3pj9A6h7Fp-0PlYtKv7iJKDiXnHDmt2YNzNm34SvHO1-dNilTh85M1TgLD8X5fO2aKLcUgcP8zxmPU21jYFb-AXvxRqzdwlJ1bOC8Gm2t4mzfznlD55tbEIhtbLCjJm0KFkQDvsm8p0PnpFbmyRjiv9PNOiaCWCwT8nXMae3MQw/http%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > . If the e-mail was sent > to you in error but does not contain patient information, please contact > the sender and properly dispose of the e-mail. > Please note that this e-mail is not secure (encrypted). If you do not > wish to continue communication over unencrypted e-mail, please notify the > sender of this message immediately. Continuing to send or respond to > e-mail after receiving this message means you understand and accept this > risk and wish to continue to communicate over unencrypted e-mail. >
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