Looks like it downloaded fine. In that case, just move that file to your FS
install:
mv fs_install_mcr $FREESURFER_HOME/bin
and you should be good to go.
Best
Andrew
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Georgia Kapizioni
<geo.kapizi...@gmail.com>
Date: Monday, March 1, 2021 at 10:57 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Matlab version 2012b installation problem
External Email - Use Caution
Hello Andrew,
Thank you so much for your response.
Here is the output when running the command you suggested:
Georgias-MacBook-Pro:~ georgina$ curl MailScanner has detected a possible fraud
attempt from "secure-web.cisco.com" claiming to be
https://raw.githubusercontent.com/freesurfer/freesurfer/dev/scripts/fs_install_mcr<https://secure-web.cisco.com/1tfNVXVQ3esQw4FySP0kMQiPkBCD_Bd9dwP_rQWbOUSswz4cGOB2TzCmn_v71kFHYK2FEvyKKrZDqwwL_IpLj5LrOyzhzZatukIqXUie48O8Jld4ys_JhH-PYptJ9v1_Uin1jZ4bmMVkbtCjJWYpaooz4qrfWAO_0_S826ay8Cudv7BTfD_1PEPWASGtfSCl5PRhw8IhZV98qdiD7p6saE4cGoDkWYYI311d1UaJasC1KVZYxrrV3GJ0AOAZ23A5NuE5hvji-ypXJpiqD822fog/https%3A%2F%2Fraw.githubusercontent.com%2Ffreesurfer%2Ffreesurfer%2Fdev%2Fscripts%2Ffs_install_mcr>
-o fs_install_mcr
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 2010 100 2010 0 0 8170 0 --:--:-- --:--:-- --:--:-- 8137
(base) Georgias-MacBook-Pro:~ georgina$ ls fs_install_mcr
fs_install_mcr
I assume, it didn’t download it, right?
Georgia
On 26 Feb 2021, at 8:03 PM, Georgia Kapizioni
<geo.kapizi...@gmail.com<mailto:geo.kapizi...@gmail.com>> wrote:
Hello Andrew,
Please accept my apologies for such a detailed response, I had a health issue,
and I was just able to test what you suggested.
When I use the wget command, again I have an error: -bash: wget: command not
found
Any ideas on how to overcome this issue?
Thank you once again,
Best,
Georgia
On 9 Feb 2021, at 5:49 PM, Georgia Kapizioni
<geo.kapizi...@gmail.com<mailto:geo.kapizi...@gmail.com>> wrote:
Hello Andrew,
Thank you for your response!
The output of the first command (meaning sudo cd $FREESURFER_HOME/bin && curl
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com"
claiming to be
https://raw.githubusercontent.com/freesurfer/freesurfer/dev/scripts/fs_install_mcr<https://secure-web.cisco.com/1tfNVXVQ3esQw4FySP0kMQiPkBCD_Bd9dwP_rQWbOUSswz4cGOB2TzCmn_v71kFHYK2FEvyKKrZDqwwL_IpLj5LrOyzhzZatukIqXUie48O8Jld4ys_JhH-PYptJ9v1_Uin1jZ4bmMVkbtCjJWYpaooz4qrfWAO_0_S826ay8Cudv7BTfD_1PEPWASGtfSCl5PRhw8IhZV98qdiD7p6saE4cGoDkWYYI311d1UaJasC1KVZYxrrV3GJ0AOAZ23A5NuE5hvji-ypXJpiqD822fog/https%3A%2F%2Fraw.githubusercontent.com%2Ffreesurfer%2Ffreesurfer%2Fdev%2Fscripts%2Ffs_install_mcr>
-o fs_install_mcr && chmod +x) was:
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 2010 100 2010 0 0 5275 0 --:--:-- --:--:-- --:--:-- 5261
usage: chmod [-fhv] [-R [-H | -L | -P]] [-a | +a | =a [i][# [ n]]] mode|entry
file ...
chmod [-fhv] [-R [-H | -L | -P]] [-E | -C | -N | -i | -I] file …
However, when I type: ls -l $FREESURFER_HOME/bin/fs_install_mcr as you
suggested, it appears ls: /Applications/freesurfer/bin/fs_install_mcr: No such
file or directory
When I type again fs_install_mcr while being in Freesurfer/bin path again
fs_install_mcr: command not found appears.
Any idea what went wrong?
Thanks once again,
Best,
Georgia
On 9 Feb 2021, at 1:05 AM, Georgia Kapizioni
<geo.kapizi...@gmail.com<mailto:geo.kapizi...@gmail.com>> wrote:
Dear Freesurfer experts,
I am trying to install Matlab version 2012b but a message appears: command not
found.
Firstly, I ran: sudo cd $FREESURFER_HOME/bin && curl MailScanner has detected a
possible fraud attempt from "secure-web.cisco.com" claiming to be
https://raw.githubusercontent.com/freesurfer/freesurfer/dev/scripts/fs_install_mcr<https://secure-web.cisco.com/1tfNVXVQ3esQw4FySP0kMQiPkBCD_Bd9dwP_rQWbOUSswz4cGOB2TzCmn_v71kFHYK2FEvyKKrZDqwwL_IpLj5LrOyzhzZatukIqXUie48O8Jld4ys_JhH-PYptJ9v1_Uin1jZ4bmMVkbtCjJWYpaooz4qrfWAO_0_S826ay8Cudv7BTfD_1PEPWASGtfSCl5PRhw8IhZV98qdiD7p6saE4cGoDkWYYI311d1UaJasC1KVZYxrrV3GJ0AOAZ23A5NuE5hvji-ypXJpiqD822fog/https%3A%2F%2Fraw.githubusercontent.com%2Ffreesurfer%2Ffreesurfer%2Fdev%2Fscripts%2Ffs_install_mcr>
-o fs_install_mcr && chmod +x
Then I typed: fs_install_mcr R2012b and I receive: command not found.
My FS version is 6 and I have already install Matlab2016_b on my Mac.
Could you please help me resolve this issue?
Thank you in advance,
Georgia
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