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Hi all,
I am running a test of long FS on some subjects to see if I can improve the
segmentation accuracy compared to cross FS. The aparc+aseg.mgz output of
long FS, however, is not aligned with the original timepoint structural
scan, but rather to the T1 image in the "base" folder (which I believe is
an average of the original timepoints).

I was wondering if there was a way to directly compare the results of long
FS segmentation to those of cross FS segmentation, essentially having both
the original aparc+aseg image and the new one in the same space and
aligned, or if that does not make sense since we are doing the long FS
segmentation on an effectively new image.

Thank you,
Michele
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