Hi Mackenzie,
Can you let us know what OS and version you’re running this on?
Thanks,
Andrew
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Langan, Mackenzie
<mackenzie.lan...@icahn.mssm.edu>
Date: Wednesday, February 3, 2021 at 10:31 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Issue with the hypothalamic segmentation
External Email - Use Caution
Good Morning,
I have been trying to run the hypothalamic segmentation and get the following
error:
aalqadi@athena:/zstore/data/aalqadi/aalqadi/mPFC/data$
mri_segment_hypothalamic_subunits --s S05486
Traceback (most recent call last):
File
"/usr/local/freesurfer_dev/freesurfer/python/scripts/mri_segment_hypothalamic_subunits",
line 10, in <module>
import freesurfer as fs
File
"/usr/local/freesurfer_dev/freesurfer/python/packages/freesurfer/__init__.py",
line 8, in <module>
from . import bindings
ImportError: /lib/x86_64-linux-gnu/libcrypt.so.1: version `XCRYPT_2.0' not
found (required by
/usr/local/freesurfer_dev/freesurfer/python/packages/freesurfer/bindings.cpython-36m-x86_64-linux-gnu.so<http://secure-web.cisco.com/1hzKok6ieorAQWILbwXrHm4nWv5aGVWrgLXUjICNL0HcYQDptT0fNHU6AOnJE3qXzhl9NRtNMMllRlwPcgtVISVPA9DsJir2pbwpc4pB0rKgOo_wc0yoGtFyiaXPXPRResPg1pGzrgr4u8Ao1pz7izacK37z0ZG3aoldmpUuq7kUqK3wyc40aHRkJp7A41zrUm-ikFytp9N0shHTbuPDQfnmsIvxVlN5ohXYytZXde24kCCukWp5zEZbAtWoVD6A8g0X2TtrYVzai92-jQmruSg/http%3A%2F%2Fbindings.cpython-36m-x86_64-linux-gnu.so%2F>)
We installed the development version of freesurfer to see if that would work to
run this, but that didn't work. We then installed XCRYPT_2.0 but still got the
same error. We have two versions of python on our machine which we amended to
fix the problem, but still get the same error. I am at a loss as to what I
should try next to implement this. Any help would be great. Thanks
Best,
Mackenzie
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