Did you demean the task regressor? Is the problem that you cannot run
tksurfer-sess? Or are you reporting multiple problems?
On 2/3/2021 8:32 AM, Doll, Laura wrote:
External Email - Use Caution
Hi everyone,
Is it possible to do an FIR analysis using a task regressor instead of
(or additional to) a paradigm file?
More precisely, we want to use pupil size as task regressor. It was
recorded during an auditory detection task (event related).
This works when I use "-spmhrf" or other HRF options.
However, for FIR I cannot get the expected time course in the single
subjects data.
Tksurfer ends with an error because it cannot find the file h.nii.gz:
ERROR: could not determine file for [...]/S01_3/bold/PupilFIR.lh/h
This file indeed does not exist, there is only one called "h-offset".
The commands I used until that point are (here neglecting the original
task, but using -event-related etc instead of no task results in the
same error):
mkanalysis-sess -fsd bold -stc up -surface fsaverage lh -fwhm 5
-notask -fir 4 20 -TR 2 -polyfit 2 -analysis PupilFIR.lh -per-run
-taskreg Pupil 1
selxavg3-sess -s S01_3 -analysis PupilFIR.lh
tksurfer-sess -s S01_3 -analysis PupilFIR.lh -call -tksurfer
Is there any solution for this?
Or any reason why it should not be done that way?
Best,
Laura
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
