please send the result of
ls -l
/rds/general/project/imperialapc/live/freesurfer/APC001/label/lh.aparc.anno
ls -ld /rds/general/project/imperialapc/live/freesurfer/APC001/label
ls -ld /rds/general/project/imperialapc/live/freesurfer/APC001
ls -ld /rds/general/project/imperialapc/live/freesurfer
ls -ld /rds/general/project/imperialapc/live
On 1/26/2021 7:50 AM, Loreto, Flavia wrote:
External Email - Use Caution
Dear FreeSurfer Experts,
I am writing to kindly follow-up on my below query. Is there any
chance you could assist me?
Thank you.
Kind regards,
Flavia
*From: *"f.lor...@imperial.ac.uk" <f.lor...@imperial.ac.uk>
*Date: *Monday, 18 January 2021 at 13:19
*To: *"Freesurfer@nmr.mgh.harvard.edu" <Freesurfer@nmr.mgh.harvard.edu>
*Subject: *Recon-all error: CTABWriteFileASCII; could not open file
for writing
Dear FreeSurfer Experts,
/Version: FreeSurfer 7.0/
/Platform: Bash remotely through High Performance Computing (HPC) on a
MacOS Mojave/
We are trying to run recon-all on T1 images but the job stops with the
following error:
Reading annotation
/rds/general/project/imperialapc/live/freesurfer/APC001/label/lh.aparc.annot
reading colortable from annotation file...
colortable with 36 entries read (originally
/autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
Seg base 1000
error: Permission denied
error: CTABwriteFileASCII(/tmp/mri_segstats.tmp.APC001.lh.176.ctab):
could not open for writing
Could you please help us figuring out where is the problem? I am
attaching the script we are running and the recon-all log forone of
our analysed subjects.
Thank you for your help.
Kind regards,
Flavia
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