Hi Simone
You can do this all in freeview. If you give it -ss <fname.tif> it will save a
snapshot to that file and exit. Check out the help. There is something like
–view lateral or medial that you can use. I think everything you have below has
a command line switch, but if you can’t find one post again and we’ll sort it
out
Cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Simone Cauzzo
Sent: Saturday, January 23, 2021 1:33 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Taking screenshots on different views with tksurfer
External Email - Use Caution
Dear all,
I have a lot of different surface analyses to display. For each test that I
performed, I have to take a screenshot of the left and right medial surfaces
and left and right lateral surfaces (4 screenshots for each analysis). Since
there's a lot of screenshots to take and I'd like to test different thresholds,
I'd like to do it from the command line without using GUIs.
At the moment I'm using
tksurfer mni152.fnirt lh inflated -ov *********.nii.gz -fminmax 5 8
-truncphaseflag 1 -snap *************.tif
But this only helps me with lateral views. Is there any way to automatically
take a snap of the medial view?
Thanks
Simone
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