Hi Antonín
You can specify what surfaces to use in mris_thickness:
mris_thickness -pial <path to pial surface> -white <path to white surface> …
cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Antonín Škoch
Sent: Wednesday, December 9, 2020 6:16 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Computing thickness from woT2.pial surfaces
External Email - Use Caution
Dear experts,
I have processed my data with -T2pial option. I would like now to also compute
thickness from woT2.pial surfaces (i.e. surfaces created by T1 only). Is here a
comannd which does the trick, without running recon-all -pial (which rewrites
current .pial and .thickness files generatedy by -T2pial? I am using freeSurfer
version 6.0.
Thank you in advance,
Antonin Skoch
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
