Hi Paul
Have you tried using the wmseg?
Cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of miracle ozzoude
Sent: Wednesday, December 2, 2020 1:35 PM
To: Douglas N Greve <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Fwd: extracting mask for basal ganglia, deep grey, and
centrum semiovale
External Email - Use Caution
Any help with this will be greatly appreciated.
Thanks.
---------- Forwarded message ---------
From: miracle ozzoude <miracoo...@gmail.com<mailto:miracoo...@gmail.com>>
Date: Fri, Nov 27, 2020 at 9:28 AM
Subject: extracting mask for basal ganglia, deep grey, and centrum semiovale
To: Douglas N Greve
<freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>>
Hello Experts,
I did like to create a mask for basal ganglia, deep grey matter, and centrum
semiovale. I know how to extract the mask for the first 2 (using aseg.mgz)
however, how do I extract the last one. What mask should I use to extract the
centrum semiovale? I don't want to include the cerebellar white matter.
Thanks.
Best,
Paul
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