Do you mean you want to register the fMRI data to the anatomical? If so, use bbregister. If you've run the fMRI through FEAT, then pass the template to the --mov flag
On 12/1/2020 10:46 PM, Karan Desai wrote: External Email - Use Caution Hi FreeSurfer developers, I have Freesurfer anatomical data from recon-all, and pre-processed functional data in NifTI format from FSL and you would like to use FsFast to align that data. What would be the best way to do that using FsFast? Is this possible? Thanks. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer