It is probably easier to just run recon-all on the mni152, then use
mri_segcentroids on aparc.a2009s to extract the centroids
On 11/20/2020 2:50 AM, Hengameh Marzbani wrote:
External Email - Use Caution
Hello Freesurfer developers,
For the purpose of reporting ROIs in my article, I need a list of X Y Z
coordinates in MNI space for all the labels in the Destrieux atlas. I came
across a previous post with the following steps:
Step 1:
mri_annotation2label --subject fsaverage --hemi lh --annotation
aparc.a2009s --outdir ~/myproject/processed/tmp
Step 2:
mri_surfcluster --in ~/myproject/processed/fsaverage/surf/lh.thickness --clabel
lh.G_pariet_inf-Supramar.label --sum
~/myproject/processed/tmp/sum.lh_G_pariet_inf-supramar --centroid --thmin 0
--hemi lh --subject fsaverage --nofixmni
Q1: All the ROIs appeared to have identical MNI coordinates. what should I do?
Q2: For reporting the list of X Y Z coordinates in MNI space for all the labels
in aseg.stats ROIs, What should I change?
Thank you in advance,
Best regards,
Hengameh
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