Hi Andy, this is a bug introduced in 7.1.1, some kind of race condition. You can fix it by commenting out this line in recon-allif($OMP_NUM_THREADS > 1 && ! $LHonly && ! $RHonly) set cmd = ($cmd --parallel) # just hemis
doug
On 11/3/2020 12:06 PM, Andy Worth wrote:
External Email - Use Caution Hello,We've experienced random crashes when using the -parallel flag with the official FS docker container at *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://hub.docker.com/r/freesurfer/freesurfer/ <https://secure-web.cisco.com/1Db9ik7eIvMj7kgkeTafe0s_PlT0VyO4BIvoM6Chj4jvyesjHAuR-kZyjg4ueyTkvPI2tO3aWk76nJniaideisxRFreGgC6FYkFflnw3OJSb2vizDEGe9I7_5KxymQSiL_4xv8wD673W6RdSI1m9IsESb2d-XzAu607hYqEI8dlEnHdiHr5ZAJMdz0-aiK0PYe_TawyFsTVoTaka9SYiXIQ/https%3A%2F%2Fhub.docker.com%2Fr%2Ffreesurfer%2Ffreesurfer%2F>. It looks like this issue: *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg67588.html <https://secure-web.cisco.com/1RTUH2ziWrAzuafGfyVCoxnmVd6xWSC1pjYKx0ENFxB4V7TrwK2DIeOzM_0SxoK0wCKIy4l_c2CnAyb_S4Jjk04MEmATnQrr7iSlt-SRGu38Kf53mx7_br6eN1MS_T55qftLf_tXHqrUIHOO6Yi1JDx5z3Bm4P6KAIQ5NwYf48lOKx7RV-Jh0d4yWKrTZLUVX9JSnwKDOkBN6WpqbBgd9Ew/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg67588.html>.Is there a fixed recon-all that I can use with that image (or maybe a new image coming soon)?Thanks, Andy Worth Scientific Solutions Engineer he, him, his <http://secure-web.cisco.com/1vnPdwWhDIRo0dgACPHUy8Cs0L0bRI0jZF0TyQMe6r95oCZi5ZZJrHwieBuwTyFHuXGfSk-EFFswgKI0y4TShj-ugXmlLhN4ZMce8CQGrkghGM_5NKI_GBnrhl7xI1ESkPP351SklVdFREt2FF3H-LGVYQ81FNvEo5KGxT45BBlfYIaW2kbjipETH3zboahRGW81CHHztSz-xDdpqsCRX2g/http%3A%2F%2Fwww.flywheel.io%2F> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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