Hi Julia,
The -tp flags for the base creation require a subject ID as input, but you
supplied a nifty file. That’s why it can’t find any subject files. See
https://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalProcessing.
Best,
Andrew
From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Julia Lam
<julia....@mau.se>
Reply-To: FS Help <freesurfer@nmr.mgh.harvard.edu>
Date: Monday, October 26, 2020 at 7:29 PM
To: FS Help <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Exited with errors, segmentation fault
External Email - Use Caution
Hi,
Thank you for your email. Sorry about that. Here they are.
Best regards,
Julia
> 27 okt. 2020 kl. 00:17 skrev Hoopes, Andrew <ahoo...@mgh.harvard.edu>:
>
> Hi Julia,
> I think you might have forgotten to attach the logs :)
> Andrew
>
> On 10/25/20, 11:55 AM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of
> Julia Lam" <freesurfer-boun...@nmr.mgh.harvard.edu on behalf of
> julia....@mau.se> wrote:
>
> External Email - Use Caution
>
> Hi Andrew,
> Thank you for your reply. Updating freesurfer solved the problem. However,
> when I ran step 2 in the longitudinal processing three subjects exited with
> errors. I’ve attached the recon-all.log and recon-all.error. What can I do to
> solve this problem?
>
> Thank you in advance.
>
> Kind regards,
> Julia Lam
>
>> 20 okt. 2020 kl. 00:17 skrev Hoopes, Andrew <ahoo...@mgh.harvard.edu>:
>>
>> Hi Julia,
>>
>> This is a small bug that's been fixed in the 7.1.1 patch release. I would
>> recommend updating freesurfer versions (there will be no differences in
>> recon-all results).
>>
>> Best,
>> Andrew
>>
>> On 10/13/20, 8:44 AM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of
>> Julia Lam" <freesurfer-boun...@nmr.mgh.harvard.edu on behalf of
>> julia....@mau.se> wrote:
>>
>> External Email - Use Caution
>>
>> Hi,
>> In one of 56 volumes, recon-all exited with errors (segmentation fault). I
>> tried to rerun but received the same result. How can this be solved?
>>
>> I’ve attached the recon-all.log and recon-all.error.
>>
>> I am looking forward to your reply.
>>
>> Kind regards,
>> Julia Lam
>>
>>
>>
>>
>>
>> _______________________________________________
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
